miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13221 3' -61.9 NC_003401.1 + 132402 0.66 0.606674
Target:  5'- cCGGGCGcaagauGGCGGccgcGGCCCGgcGGCGGc-- -3'
miRNA:   3'- -GUCCGC------CCGCU----CCGGGCa-CCGCUuuu -5'
13221 3' -61.9 NC_003401.1 + 49849 0.66 0.606674
Target:  5'- gGGGCacgaGGGUGAGGUCCcuugcgagucagGUGGCGu--- -3'
miRNA:   3'- gUCCG----CCCGCUCCGGG------------CACCGCuuuu -5'
13221 3' -61.9 NC_003401.1 + 17467 0.66 0.606674
Target:  5'- gCAGGCGGGUGAGGUugacgaagCUGaaucuaccccGGUGAAAAg -3'
miRNA:   3'- -GUCCGCCCGCUCCG--------GGCa---------CCGCUUUU- -5'
13221 3' -61.9 NC_003401.1 + 96395 0.66 0.576717
Target:  5'- uGGGCGGGCaaAGGCUCGUcGCGc--- -3'
miRNA:   3'- gUCCGCCCGc-UCCGGGCAcCGCuuuu -5'
13221 3' -61.9 NC_003401.1 + 10832 0.66 0.556925
Target:  5'- uGGGgGGGCGucGCCUacGGCGAGGc -3'
miRNA:   3'- gUCCgCCCGCucCGGGcaCCGCUUUu -5'
13221 3' -61.9 NC_003401.1 + 121153 0.67 0.547101
Target:  5'- -cGGCGGGCGcgggGGGCgCGgggGGCGc--- -3'
miRNA:   3'- guCCGCCCGC----UCCGgGCa--CCGCuuuu -5'
13221 3' -61.9 NC_003401.1 + 73715 0.68 0.489504
Target:  5'- gUAGGUucaguaucGGGCauuuuaGGGGCCCG-GGCGAGGc -3'
miRNA:   3'- -GUCCG--------CCCG------CUCCGGGCaCCGCUUUu -5'
13221 3' -61.9 NC_003401.1 + 8874 0.68 0.488567
Target:  5'- gGGGCGcGGCGuGGaccgcaaCCUGUGGcCGGAAAg -3'
miRNA:   3'- gUCCGC-CCGCuCC-------GGGCACC-GCUUUU- -5'
13221 3' -61.9 NC_003401.1 + 27660 0.68 0.468174
Target:  5'- uGGGCGGcG-GGGGCUggaguugccggcugCGUGGCGAGAc -3'
miRNA:   3'- gUCCGCC-CgCUCCGG--------------GCACCGCUUUu -5'
13221 3' -61.9 NC_003401.1 + 132508 0.7 0.337189
Target:  5'- gGGGCGGcggccGCG-GGCCCGggccGGCGggGc -3'
miRNA:   3'- gUCCGCC-----CGCuCCGGGCa---CCGCuuUu -5'
13221 3' -61.9 NC_003401.1 + 133694 0.71 0.315395
Target:  5'- cCGGGCGGGggaGAGGCCCG-GGUc---- -3'
miRNA:   3'- -GUCCGCCCg--CUCCGGGCaCCGcuuuu -5'
13221 3' -61.9 NC_003401.1 + 132663 0.73 0.22241
Target:  5'- gAGGgGGGcCGGGGCCCGgGGCGc--- -3'
miRNA:   3'- gUCCgCCC-GCUCCGGGCaCCGCuuuu -5'
13221 3' -61.9 NC_003401.1 + 63790 1.05 0.001127
Target:  5'- cCAGGCGGGCGAGGCCCGUGGCGAAAAg -3'
miRNA:   3'- -GUCCGCCCGCUCCGGGCACCGCUUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.