miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13223 3' -58.6 NC_003401.1 + 123220 0.66 0.801086
Target:  5'- aCCGGCgugCCGCCCga-GCUGugcAGCg -3'
miRNA:   3'- cGGCCGagaGGCGGGaagCGGCu--UUG- -5'
13223 3' -58.6 NC_003401.1 + 133540 0.66 0.801086
Target:  5'- cCCGGgcCUCUcccCCGCCCggacCGCCGGGc- -3'
miRNA:   3'- cGGCC--GAGA---GGCGGGaa--GCGGCUUug -5'
13223 3' -58.6 NC_003401.1 + 22269 0.66 0.801086
Target:  5'- cGCCGGgUUCuUCUGCCCUUU-UUGGGACg -3'
miRNA:   3'- -CGGCC-GAG-AGGCGGGAAGcGGCUUUG- -5'
13223 3' -58.6 NC_003401.1 + 23663 0.66 0.783119
Target:  5'- cGCCGcGCUUUCC-CCCa-CGCCGcGAUu -3'
miRNA:   3'- -CGGC-CGAGAGGcGGGaaGCGGCuUUG- -5'
13223 3' -58.6 NC_003401.1 + 14679 0.66 0.764621
Target:  5'- cGCUGGUg--CCGUCCUcgguUCGCCccaGGAGCu -3'
miRNA:   3'- -CGGCCGagaGGCGGGA----AGCGG---CUUUG- -5'
13223 3' -58.6 NC_003401.1 + 78083 0.66 0.755195
Target:  5'- uGCCGGCg--CCGCCac-CGCUGcAACc -3'
miRNA:   3'- -CGGCCGagaGGCGGgaaGCGGCuUUG- -5'
13223 3' -58.6 NC_003401.1 + 119780 0.67 0.716518
Target:  5'- -aCGGC-CUCCGCCaaucUgGCCGGAGg -3'
miRNA:   3'- cgGCCGaGAGGCGGga--AgCGGCUUUg -5'
13223 3' -58.6 NC_003401.1 + 27820 0.67 0.70665
Target:  5'- aGCCGGCaaCUCCaGCCCc-CGCCGc--- -3'
miRNA:   3'- -CGGCCGa-GAGG-CGGGaaGCGGCuuug -5'
13223 3' -58.6 NC_003401.1 + 107892 0.68 0.686739
Target:  5'- uCCGGCUCggCCGCCCcgagcgUUGCCc---- -3'
miRNA:   3'- cGGCCGAGa-GGCGGGa-----AGCGGcuuug -5'
13223 3' -58.6 NC_003401.1 + 61414 0.68 0.636331
Target:  5'- uGUCGGCUCUUaaaGCCaaaagCGCUGAAGa -3'
miRNA:   3'- -CGGCCGAGAGg--CGGgaa--GCGGCUUUg -5'
13223 3' -58.6 NC_003401.1 + 7739 0.69 0.605982
Target:  5'- gGCCGGgUUUCCGUCCUcuUCGCgGucucuaAAGCu -3'
miRNA:   3'- -CGGCCgAGAGGCGGGA--AGCGgC------UUUG- -5'
13223 3' -58.6 NC_003401.1 + 47649 0.7 0.545975
Target:  5'- cGCCGcgaGgUCUCUGCcaCCUUCGCCGucGCu -3'
miRNA:   3'- -CGGC---CgAGAGGCG--GGAAGCGGCuuUG- -5'
13223 3' -58.6 NC_003401.1 + 118585 0.71 0.46931
Target:  5'- gGCCGGC-CUCUGCCCggcCaCCGAGGa -3'
miRNA:   3'- -CGGCCGaGAGGCGGGaa-GcGGCUUUg -5'
13223 3' -58.6 NC_003401.1 + 14168 0.72 0.450996
Target:  5'- aCCGauGCUC-CCGCCCcugccggCGCCGGAGCc -3'
miRNA:   3'- cGGC--CGAGaGGCGGGaa-----GCGGCUUUG- -5'
13223 3' -58.6 NC_003401.1 + 118275 0.73 0.398532
Target:  5'- gGgCGGCUUuugCCGCCCggggUCGCCGGc-- -3'
miRNA:   3'- -CgGCCGAGa--GGCGGGa---AGCGGCUuug -5'
13223 3' -58.6 NC_003401.1 + 111343 0.73 0.398532
Target:  5'- aGCUGGgaUUCUGCCCacgUUGCCGAAAa -3'
miRNA:   3'- -CGGCCgaGAGGCGGGa--AGCGGCUUUg -5'
13223 3' -58.6 NC_003401.1 + 132332 0.74 0.327567
Target:  5'- cCCGGCcCUCCGCCC--CGCCGGc-- -3'
miRNA:   3'- cGGCCGaGAGGCGGGaaGCGGCUuug -5'
13223 3' -58.6 NC_003401.1 + 69600 1.1 0.001296
Target:  5'- gGCCGGCUCUCCGCCCUUCGCCGAAACc -3'
miRNA:   3'- -CGGCCGAGAGGCGGGAAGCGGCUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.