miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13223 5' -55.4 NC_003401.1 + 27187 0.66 0.900022
Target:  5'- -aGUCCCCGC----AGAGAGCGGUa- -3'
miRNA:   3'- gcCAGGGGCGauucUCUUUCGUCGgu -5'
13223 5' -55.4 NC_003401.1 + 114366 0.66 0.900022
Target:  5'- -aGUCCCgUGUUGugauuuGGGGAGGGCGGUCAg -3'
miRNA:   3'- gcCAGGG-GCGAU------UCUCUUUCGUCGGU- -5'
13223 5' -55.4 NC_003401.1 + 72670 0.66 0.87936
Target:  5'- uGGcaaCCCguaagauugaaGCUAAGGuGAGGGCGGCCAc -3'
miRNA:   3'- gCCag-GGG-----------CGAUUCU-CUUUCGUCGGU- -5'
13223 5' -55.4 NC_003401.1 + 20882 0.66 0.87936
Target:  5'- gGGUCCuCCGC--AGcuGAAGCAGCa- -3'
miRNA:   3'- gCCAGG-GGCGauUCucUUUCGUCGgu -5'
13223 5' -55.4 NC_003401.1 + 17188 0.66 0.872009
Target:  5'- gCGGagUCCGCaGGGAGAgcucGAGCGGCgAg -3'
miRNA:   3'- -GCCagGGGCGaUUCUCU----UUCGUCGgU- -5'
13223 5' -55.4 NC_003401.1 + 94208 0.67 0.864434
Target:  5'- uCGGUguaCCCCguaaGCUGAGAGGuucCGGCCGu -3'
miRNA:   3'- -GCCA---GGGG----CGAUUCUCUuucGUCGGU- -5'
13223 5' -55.4 NC_003401.1 + 64515 0.67 0.864434
Target:  5'- cCGGUUgCCGCgu-GGGc-GGUAGCCAg -3'
miRNA:   3'- -GCCAGgGGCGauuCUCuuUCGUCGGU- -5'
13223 5' -55.4 NC_003401.1 + 108846 0.67 0.856642
Target:  5'- uGG-CCUCGCUGcGAGAAcuGGC-GCCGa -3'
miRNA:   3'- gCCaGGGGCGAUuCUCUU--UCGuCGGU- -5'
13223 5' -55.4 NC_003401.1 + 115254 0.67 0.856642
Target:  5'- aGGUCCCC-C--GGuGGGAGCGGCUc -3'
miRNA:   3'- gCCAGGGGcGauUCuCUUUCGUCGGu -5'
13223 5' -55.4 NC_003401.1 + 31357 0.67 0.84043
Target:  5'- gCGGUCCCCGggcAGGGAAA-CcGCCAa -3'
miRNA:   3'- -GCCAGGGGCgauUCUCUUUcGuCGGU- -5'
13223 5' -55.4 NC_003401.1 + 119289 0.67 0.84043
Target:  5'- -cGUCCCUuuCUGAGAGcuGGCGGUCAa -3'
miRNA:   3'- gcCAGGGGc-GAUUCUCuuUCGUCGGU- -5'
13223 5' -55.4 NC_003401.1 + 7642 0.68 0.805711
Target:  5'- gGGUCCCugCGCUGAGGGguGGUuacGGCgGg -3'
miRNA:   3'- gCCAGGG--GCGAUUCUCuuUCG---UCGgU- -5'
13223 5' -55.4 NC_003401.1 + 80397 0.68 0.796601
Target:  5'- aCGGaCCaCCGCUcuGAGGugggcgccAGGUAGCCAu -3'
miRNA:   3'- -GCCaGG-GGCGAuuCUCU--------UUCGUCGGU- -5'
13223 5' -55.4 NC_003401.1 + 66618 0.68 0.787337
Target:  5'- uGGUUauaaaCUGCgguUAAGAGAcGAGCGGCCAc -3'
miRNA:   3'- gCCAGg----GGCG---AUUCUCU-UUCGUCGGU- -5'
13223 5' -55.4 NC_003401.1 + 66378 0.69 0.768381
Target:  5'- gGGUCCCCggcGCUAAGGccguGAAuGCGGCa- -3'
miRNA:   3'- gCCAGGGG---CGAUUCU----CUUuCGUCGgu -5'
13223 5' -55.4 NC_003401.1 + 69420 0.7 0.676931
Target:  5'- -uGUCCCCGCcAAGAGGAuggaaacGGUAGCaCAg -3'
miRNA:   3'- gcCAGGGGCGaUUCUCUU-------UCGUCG-GU- -5'
13223 5' -55.4 NC_003401.1 + 110693 0.71 0.646779
Target:  5'- aCGaGUCCCCGC--AGAGAGGGcCAGUg- -3'
miRNA:   3'- -GC-CAGGGGCGauUCUCUUUC-GUCGgu -5'
13223 5' -55.4 NC_003401.1 + 10806 0.72 0.594668
Target:  5'- uGGUCCgUgGCUccGAGggGGUGGCCGg -3'
miRNA:   3'- gCCAGG-GgCGAuuCUCuuUCGUCGGU- -5'
13223 5' -55.4 NC_003401.1 + 10195 0.72 0.55344
Target:  5'- cCGGUCCUCugcagaucaGUUAAGGGAGucgucgcuGGCGGCCAu -3'
miRNA:   3'- -GCCAGGGG---------CGAUUCUCUU--------UCGUCGGU- -5'
13223 5' -55.4 NC_003401.1 + 132556 0.73 0.533136
Target:  5'- cCGG-CCCCGCgaaccGAAAGCGGCCc -3'
miRNA:   3'- -GCCaGGGGCGauucuCUUUCGUCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.