miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13224 3' -51.9 NC_003401.1 + 126961 0.66 0.98521
Target:  5'- uGACAgcgGC-CGGCCCAg--G-GGUCCc -3'
miRNA:   3'- gCUGUa--CGaGUUGGGUagaCaCCAGG- -5'
13224 3' -51.9 NC_003401.1 + 115843 0.66 0.976629
Target:  5'- gGGCG-GCUCGGCuCCGgg-GUGGcUCCg -3'
miRNA:   3'- gCUGUaCGAGUUG-GGUagaCACC-AGG- -5'
13224 3' -51.9 NC_003401.1 + 115524 0.66 0.976629
Target:  5'- gGGCG-GCUCGGCuCCGgg-GUGGcUCCg -3'
miRNA:   3'- gCUGUaCGAGUUG-GGUagaCACC-AGG- -5'
13224 3' -51.9 NC_003401.1 + 115556 0.66 0.976629
Target:  5'- gGGCG-GCUCGGCuCCGgg-GUGGcUCCg -3'
miRNA:   3'- gCUGUaCGAGUUG-GGUagaCACC-AGG- -5'
13224 3' -51.9 NC_003401.1 + 115588 0.66 0.976629
Target:  5'- gGGCG-GCUCGGCuCCGgg-GUGGcUCCg -3'
miRNA:   3'- gCUGUaCGAGUUG-GGUagaCACC-AGG- -5'
13224 3' -51.9 NC_003401.1 + 115620 0.66 0.976629
Target:  5'- gGGCG-GCUCGGCuCCGgg-GUGGcUCCg -3'
miRNA:   3'- gCUGUaCGAGUUG-GGUagaCACC-AGG- -5'
13224 3' -51.9 NC_003401.1 + 115652 0.66 0.976629
Target:  5'- gGGCG-GCUCGGCuCCGgg-GUGGcUCCg -3'
miRNA:   3'- gCUGUaCGAGUUG-GGUagaCACC-AGG- -5'
13224 3' -51.9 NC_003401.1 + 115684 0.66 0.976629
Target:  5'- gGGCG-GCUCGGCuCCGgg-GUGGcUCCg -3'
miRNA:   3'- gCUGUaCGAGUUG-GGUagaCACC-AGG- -5'
13224 3' -51.9 NC_003401.1 + 115716 0.66 0.976629
Target:  5'- gGGCG-GCUCGGCuCCGgg-GUGGcUCCg -3'
miRNA:   3'- gCUGUaCGAGUUG-GGUagaCACC-AGG- -5'
13224 3' -51.9 NC_003401.1 + 115779 0.66 0.976629
Target:  5'- gGGCG-GCUCGGCuCCGgg-GUGGcUCCg -3'
miRNA:   3'- gCUGUaCGAGUUG-GGUagaCACC-AGG- -5'
13224 3' -51.9 NC_003401.1 + 115492 0.66 0.976629
Target:  5'- gGGCG-GCUCGGCuCCGgg-GUGGcUCCg -3'
miRNA:   3'- gCUGUaCGAGUUG-GGUagaCACC-AGG- -5'
13224 3' -51.9 NC_003401.1 + 115460 0.66 0.976629
Target:  5'- gGGCG-GCUCGGCuCCGgg-GUGGcUCCg -3'
miRNA:   3'- gCUGUaCGAGUUG-GGUagaCACC-AGG- -5'
13224 3' -51.9 NC_003401.1 + 115875 0.66 0.976629
Target:  5'- gGGCG-GCUCGGCuCCGgg-GUGGcUCCg -3'
miRNA:   3'- gCUGUaCGAGUUG-GGUagaCACC-AGG- -5'
13224 3' -51.9 NC_003401.1 + 115907 0.66 0.976629
Target:  5'- gGGCG-GCUCGGCuCCGgg-GUGGcUCCg -3'
miRNA:   3'- gCUGUaCGAGUUG-GGUagaCACC-AGG- -5'
13224 3' -51.9 NC_003401.1 + 115939 0.66 0.976629
Target:  5'- gGGCG-GCUCGGCuCCGgg-GUGGcUCCg -3'
miRNA:   3'- gCUGUaCGAGUUG-GGUagaCACC-AGG- -5'
13224 3' -51.9 NC_003401.1 + 115300 0.66 0.976629
Target:  5'- gGGCG-GCUCGGCuCCGgg-GUGGcUCCg -3'
miRNA:   3'- gCUGUaCGAGUUG-GGUagaCACC-AGG- -5'
13224 3' -51.9 NC_003401.1 + 115332 0.66 0.976629
Target:  5'- gGGCG-GCUCGGCuCCGgg-GUGGcUCCg -3'
miRNA:   3'- gCUGUaCGAGUUG-GGUagaCACC-AGG- -5'
13224 3' -51.9 NC_003401.1 + 115396 0.66 0.976629
Target:  5'- gGGCG-GCUCGGCuCCGgg-GUGGcUCCg -3'
miRNA:   3'- gCUGUaCGAGUUG-GGUagaCACC-AGG- -5'
13224 3' -51.9 NC_003401.1 + 115428 0.66 0.976629
Target:  5'- gGGCG-GCUCGGCuCCGgg-GUGGcUCCg -3'
miRNA:   3'- gCUGUaCGAGUUG-GGUagaCACC-AGG- -5'
13224 3' -51.9 NC_003401.1 + 115811 0.66 0.976629
Target:  5'- gGGCG-GCUCGGCuCCGgg-GUGGcUCCg -3'
miRNA:   3'- gCUGUaCGAGUUG-GGUagaCACC-AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.