Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13224 | 3' | -51.9 | NC_003401.1 | + | 71856 | 1.13 | 0.003477 |
Target: 5'- aCGACAUGCUCAACCCAUCUGUGGUCCu -3' miRNA: 3'- -GCUGUACGAGUUGGGUAGACACCAGG- -5' |
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13224 | 3' | -51.9 | NC_003401.1 | + | 40990 | 0.76 | 0.611533 |
Target: 5'- ---gGUGCagCAACUCAUCUGUGGUCa -3' miRNA: 3'- gcugUACGa-GUUGGGUAGACACCAGg -5' |
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13224 | 3' | -51.9 | NC_003401.1 | + | 105531 | 0.73 | 0.756802 |
Target: 5'- aCGGCGUGgUUuugGACCaa-CUGUGGUCCa -3' miRNA: 3'- -GCUGUACgAG---UUGGguaGACACCAGG- -5' |
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13224 | 3' | -51.9 | NC_003401.1 | + | 118400 | 0.71 | 0.860999 |
Target: 5'- cCGGCggGUUCGACCCAUUgaccgcauccucgGUGG-CCg -3' miRNA: 3'- -GCUGuaCGAGUUGGGUAGa------------CACCaGG- -5' |
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13224 | 3' | -51.9 | NC_003401.1 | + | 8044 | 0.68 | 0.953661 |
Target: 5'- gCGGCGUGuCUCGACCgCGg----GGUCCu -3' miRNA: 3'- -GCUGUAC-GAGUUGG-GUagacaCCAGG- -5' |
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13224 | 3' | -51.9 | NC_003401.1 | + | 40707 | 0.68 | 0.955278 |
Target: 5'- uCGACggauuguuccgcuggGUGCUCGACCCccuuaaUUGUGG-CCg -3' miRNA: 3'- -GCUG---------------UACGAGUUGGGua----GACACCaGG- -5' |
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13224 | 3' | -51.9 | NC_003401.1 | + | 44174 | 0.68 | 0.957631 |
Target: 5'- -----aGCUCGACCCAaCgg-GGUCCa -3' miRNA: 3'- gcuguaCGAGUUGGGUaGacaCCAGG- -5' |
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13224 | 3' | -51.9 | NC_003401.1 | + | 42168 | 0.68 | 0.957631 |
Target: 5'- gGACAgucugGCUCAcguaucuCCCGUCgucgugaGUGGUCa -3' miRNA: 3'- gCUGUa----CGAGUu------GGGUAGa------CACCAGg -5' |
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13224 | 3' | -51.9 | NC_003401.1 | + | 28958 | 0.67 | 0.974005 |
Target: 5'- gGACGUGCUCuauGuuUAUCgGUagagGGUCCg -3' miRNA: 3'- gCUGUACGAGu--UggGUAGaCA----CCAGG- -5' |
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13224 | 3' | -51.9 | NC_003401.1 | + | 115779 | 0.66 | 0.976629 |
Target: 5'- gGGCG-GCUCGGCuCCGgg-GUGGcUCCg -3' miRNA: 3'- gCUGUaCGAGUUG-GGUagaCACC-AGG- -5' |
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13224 | 3' | -51.9 | NC_003401.1 | + | 115716 | 0.66 | 0.976629 |
Target: 5'- gGGCG-GCUCGGCuCCGgg-GUGGcUCCg -3' miRNA: 3'- gCUGUaCGAGUUG-GGUagaCACC-AGG- -5' |
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13224 | 3' | -51.9 | NC_003401.1 | + | 115684 | 0.66 | 0.976629 |
Target: 5'- gGGCG-GCUCGGCuCCGgg-GUGGcUCCg -3' miRNA: 3'- gCUGUaCGAGUUG-GGUagaCACC-AGG- -5' |
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13224 | 3' | -51.9 | NC_003401.1 | + | 115652 | 0.66 | 0.976629 |
Target: 5'- gGGCG-GCUCGGCuCCGgg-GUGGcUCCg -3' miRNA: 3'- gCUGUaCGAGUUG-GGUagaCACC-AGG- -5' |
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13224 | 3' | -51.9 | NC_003401.1 | + | 115588 | 0.66 | 0.976629 |
Target: 5'- gGGCG-GCUCGGCuCCGgg-GUGGcUCCg -3' miRNA: 3'- gCUGUaCGAGUUG-GGUagaCACC-AGG- -5' |
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13224 | 3' | -51.9 | NC_003401.1 | + | 115556 | 0.66 | 0.976629 |
Target: 5'- gGGCG-GCUCGGCuCCGgg-GUGGcUCCg -3' miRNA: 3'- gCUGUaCGAGUUG-GGUagaCACC-AGG- -5' |
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13224 | 3' | -51.9 | NC_003401.1 | + | 115524 | 0.66 | 0.976629 |
Target: 5'- gGGCG-GCUCGGCuCCGgg-GUGGcUCCg -3' miRNA: 3'- gCUGUaCGAGUUG-GGUagaCACC-AGG- -5' |
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13224 | 3' | -51.9 | NC_003401.1 | + | 115492 | 0.66 | 0.976629 |
Target: 5'- gGGCG-GCUCGGCuCCGgg-GUGGcUCCg -3' miRNA: 3'- gCUGUaCGAGUUG-GGUagaCACC-AGG- -5' |
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13224 | 3' | -51.9 | NC_003401.1 | + | 115460 | 0.66 | 0.976629 |
Target: 5'- gGGCG-GCUCGGCuCCGgg-GUGGcUCCg -3' miRNA: 3'- gCUGUaCGAGUUG-GGUagaCACC-AGG- -5' |
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13224 | 3' | -51.9 | NC_003401.1 | + | 115428 | 0.66 | 0.976629 |
Target: 5'- gGGCG-GCUCGGCuCCGgg-GUGGcUCCg -3' miRNA: 3'- gCUGUaCGAGUUG-GGUagaCACC-AGG- -5' |
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13224 | 3' | -51.9 | NC_003401.1 | + | 115332 | 0.66 | 0.976629 |
Target: 5'- gGGCG-GCUCGGCuCCGgg-GUGGcUCCg -3' miRNA: 3'- gCUGUaCGAGUUG-GGUagaCACC-AGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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