miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13224 3' -51.9 NC_003401.1 + 115332 0.66 0.976629
Target:  5'- gGGCG-GCUCGGCuCCGgg-GUGGcUCCg -3'
miRNA:   3'- gCUGUaCGAGUUG-GGUagaCACC-AGG- -5'
13224 3' -51.9 NC_003401.1 + 115364 0.66 0.976629
Target:  5'- gGGCG-GCUCGGCuCCGgg-GUGGcUCCg -3'
miRNA:   3'- gCUGUaCGAGUUG-GGUagaCACC-AGG- -5'
13224 3' -51.9 NC_003401.1 + 115396 0.66 0.976629
Target:  5'- gGGCG-GCUCGGCuCCGgg-GUGGcUCCg -3'
miRNA:   3'- gCUGUaCGAGUUG-GGUagaCACC-AGG- -5'
13224 3' -51.9 NC_003401.1 + 115428 0.66 0.976629
Target:  5'- gGGCG-GCUCGGCuCCGgg-GUGGcUCCg -3'
miRNA:   3'- gCUGUaCGAGUUG-GGUagaCACC-AGG- -5'
13224 3' -51.9 NC_003401.1 + 115460 0.66 0.976629
Target:  5'- gGGCG-GCUCGGCuCCGgg-GUGGcUCCg -3'
miRNA:   3'- gCUGUaCGAGUUG-GGUagaCACC-AGG- -5'
13224 3' -51.9 NC_003401.1 + 115492 0.66 0.976629
Target:  5'- gGGCG-GCUCGGCuCCGgg-GUGGcUCCg -3'
miRNA:   3'- gCUGUaCGAGUUG-GGUagaCACC-AGG- -5'
13224 3' -51.9 NC_003401.1 + 115524 0.66 0.976629
Target:  5'- gGGCG-GCUCGGCuCCGgg-GUGGcUCCg -3'
miRNA:   3'- gCUGUaCGAGUUG-GGUagaCACC-AGG- -5'
13224 3' -51.9 NC_003401.1 + 115556 0.66 0.976629
Target:  5'- gGGCG-GCUCGGCuCCGgg-GUGGcUCCg -3'
miRNA:   3'- gCUGUaCGAGUUG-GGUagaCACC-AGG- -5'
13224 3' -51.9 NC_003401.1 + 115588 0.66 0.976629
Target:  5'- gGGCG-GCUCGGCuCCGgg-GUGGcUCCg -3'
miRNA:   3'- gCUGUaCGAGUUG-GGUagaCACC-AGG- -5'
13224 3' -51.9 NC_003401.1 + 115620 0.66 0.976629
Target:  5'- gGGCG-GCUCGGCuCCGgg-GUGGcUCCg -3'
miRNA:   3'- gCUGUaCGAGUUG-GGUagaCACC-AGG- -5'
13224 3' -51.9 NC_003401.1 + 116195 0.66 0.976629
Target:  5'- gGGCG-GCUCGGCuCCGgg-GUGGcUCCg -3'
miRNA:   3'- gCUGUaCGAGUUG-GGUagaCACC-AGG- -5'
13224 3' -51.9 NC_003401.1 + 28958 0.67 0.974005
Target:  5'- gGACGUGCUCuauGuuUAUCgGUagagGGUCCg -3'
miRNA:   3'- gCUGUACGAGu--UggGUAGaCA----CCAGG- -5'
13224 3' -51.9 NC_003401.1 + 44174 0.68 0.957631
Target:  5'- -----aGCUCGACCCAaCgg-GGUCCa -3'
miRNA:   3'- gcuguaCGAGUUGGGUaGacaCCAGG- -5'
13224 3' -51.9 NC_003401.1 + 42168 0.68 0.957631
Target:  5'- gGACAgucugGCUCAcguaucuCCCGUCgucgugaGUGGUCa -3'
miRNA:   3'- gCUGUa----CGAGUu------GGGUAGa------CACCAGg -5'
13224 3' -51.9 NC_003401.1 + 40707 0.68 0.955278
Target:  5'- uCGACggauuguuccgcuggGUGCUCGACCCccuuaaUUGUGG-CCg -3'
miRNA:   3'- -GCUG---------------UACGAGUUGGGua----GACACCaGG- -5'
13224 3' -51.9 NC_003401.1 + 8044 0.68 0.953661
Target:  5'- gCGGCGUGuCUCGACCgCGg----GGUCCu -3'
miRNA:   3'- -GCUGUAC-GAGUUGG-GUagacaCCAGG- -5'
13224 3' -51.9 NC_003401.1 + 118400 0.71 0.860999
Target:  5'- cCGGCggGUUCGACCCAUUgaccgcauccucgGUGG-CCg -3'
miRNA:   3'- -GCUGuaCGAGUUGGGUAGa------------CACCaGG- -5'
13224 3' -51.9 NC_003401.1 + 105531 0.73 0.756802
Target:  5'- aCGGCGUGgUUuugGACCaa-CUGUGGUCCa -3'
miRNA:   3'- -GCUGUACgAG---UUGGguaGACACCAGG- -5'
13224 3' -51.9 NC_003401.1 + 40990 0.76 0.611533
Target:  5'- ---gGUGCagCAACUCAUCUGUGGUCa -3'
miRNA:   3'- gcugUACGa-GUUGGGUAGACACCAGg -5'
13224 3' -51.9 NC_003401.1 + 71856 1.13 0.003477
Target:  5'- aCGACAUGCUCAACCCAUCUGUGGUCCu -3'
miRNA:   3'- -GCUGUACGAGUUGGGUAGACACCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.