miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13224 5' -55.9 NC_003401.1 + 18813 0.66 0.904057
Target:  5'- cGUGGUCgaGCGCGCGGauCgCGAGCuGGUg -3'
miRNA:   3'- -CGCCAGg-UGUGCGCUauG-GCUCG-UCA- -5'
13224 5' -55.9 NC_003401.1 + 12012 0.66 0.897659
Target:  5'- uCGGUCCACcCuCGAUagacggucACCGAGguGg -3'
miRNA:   3'- cGCCAGGUGuGcGCUA--------UGGCUCguCa -5'
13224 5' -55.9 NC_003401.1 + 72639 0.66 0.891029
Target:  5'- gGCGG-CCACGgccaaggcCGUGAcGCgCGGGCAGa -3'
miRNA:   3'- -CGCCaGGUGU--------GCGCUaUG-GCUCGUCa -5'
13224 5' -55.9 NC_003401.1 + 21780 0.66 0.891029
Target:  5'- cGCGGccgUCCGCuGCGCG-UGCCGcGGCGa- -3'
miRNA:   3'- -CGCC---AGGUG-UGCGCuAUGGC-UCGUca -5'
13224 5' -55.9 NC_003401.1 + 33118 0.66 0.879945
Target:  5'- aCGGUagcgcaaacuugcucUgACACGCGuAUACgCGAGCAGa -3'
miRNA:   3'- cGCCA---------------GgUGUGCGC-UAUG-GCUCGUCa -5'
13224 5' -55.9 NC_003401.1 + 132450 0.67 0.869779
Target:  5'- gGCGGcgCCcgGCGCGCGGgcCCGGGgGGc -3'
miRNA:   3'- -CGCCa-GG--UGUGCGCUauGGCUCgUCa -5'
13224 5' -55.9 NC_003401.1 + 32317 0.67 0.86226
Target:  5'- -aGGUgcCCGCcuaaaaggGCgGUGGUGCCGGGCGGUg -3'
miRNA:   3'- cgCCA--GGUG--------UG-CGCUAUGGCUCGUCA- -5'
13224 5' -55.9 NC_003401.1 + 126012 0.67 0.85453
Target:  5'- aCGGUgCCGCACaCGGUgGCCcGGCAGUc -3'
miRNA:   3'- cGCCA-GGUGUGcGCUA-UGGcUCGUCA- -5'
13224 5' -55.9 NC_003401.1 + 80791 0.67 0.846599
Target:  5'- aCGaUCCGgACGCGGgaaCGAGCGGUg -3'
miRNA:   3'- cGCcAGGUgUGCGCUaugGCUCGUCA- -5'
13224 5' -55.9 NC_003401.1 + 9025 0.68 0.795151
Target:  5'- uGCGGUCCACGcCGCGccccgcgaaGUACCccagguuuccGCAGUg -3'
miRNA:   3'- -CGCCAGGUGU-GCGC---------UAUGGcu--------CGUCA- -5'
13224 5' -55.9 NC_003401.1 + 121444 0.69 0.748134
Target:  5'- uGgGGUCCACccACGCG-UGCCgGAGgAGUu -3'
miRNA:   3'- -CgCCAGGUG--UGCGCuAUGG-CUCgUCA- -5'
13224 5' -55.9 NC_003401.1 + 82741 0.7 0.718619
Target:  5'- uGCG--CCGCAC-CGAUcGCCGAGCAGg -3'
miRNA:   3'- -CGCcaGGUGUGcGCUA-UGGCUCGUCa -5'
13224 5' -55.9 NC_003401.1 + 132557 0.7 0.708619
Target:  5'- cGCGG--CGCGCGgcuccCGAUGCCGGGCGGc -3'
miRNA:   3'- -CGCCagGUGUGC-----GCUAUGGCUCGUCa -5'
13224 5' -55.9 NC_003401.1 + 8509 0.7 0.682336
Target:  5'- gGCGGUCUuggugucggggaacaGCGCGCGAUGCagCGAGUugAGa -3'
miRNA:   3'- -CGCCAGG---------------UGUGCGCUAUG--GCUCG--UCa -5'
13224 5' -55.9 NC_003401.1 + 105641 0.7 0.678263
Target:  5'- cGCGGUCCaACGCcgagGCGAgaaacgaccACCGAGCAc- -3'
miRNA:   3'- -CGCCAGG-UGUG----CGCUa--------UGGCUCGUca -5'
13224 5' -55.9 NC_003401.1 + 62652 0.71 0.65782
Target:  5'- -aGGUCUACACGCccgguUGCCaGAGCGGc -3'
miRNA:   3'- cgCCAGGUGUGCGcu---AUGG-CUCGUCa -5'
13224 5' -55.9 NC_003401.1 + 15024 0.71 0.65577
Target:  5'- gGCGGgauuuccgugcgCCACGCGCGAcGgCGAcGCGGUg -3'
miRNA:   3'- -CGCCa-----------GGUGUGCGCUaUgGCU-CGUCA- -5'
13224 5' -55.9 NC_003401.1 + 110555 0.72 0.596256
Target:  5'- gGCuGGUCgCGuguUACGCGGUACCG-GCGGUg -3'
miRNA:   3'- -CG-CCAG-GU---GUGCGCUAUGGCuCGUCA- -5'
13224 5' -55.9 NC_003401.1 + 132538 0.72 0.575866
Target:  5'- aGCGGcCCgGCGCGCGGcGCgGGGCGGc -3'
miRNA:   3'- -CGCCaGG-UGUGCGCUaUGgCUCGUCa -5'
13224 5' -55.9 NC_003401.1 + 16687 0.76 0.363148
Target:  5'- aGCGGccgCCGCACGCGGUAUaCGAGgAGg -3'
miRNA:   3'- -CGCCa--GGUGUGCGCUAUG-GCUCgUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.