miRNA display CGI


Results 1 - 20 of 26 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13226 3' -51.9 NC_003401.1 + 21683 0.66 0.991113
Target:  5'- ---aGGACGGGcGUGGGC-ACCagGUCCg -3'
miRNA:   3'- ggagCCUGCUU-UACCUGcUGGa-CAGG- -5'
13226 3' -51.9 NC_003401.1 + 15927 0.66 0.991113
Target:  5'- cCCUCGGGCGuuGgaaccgGGAgGAuaaaguucucCCUGgCCg -3'
miRNA:   3'- -GGAGCCUGCuuUa-----CCUgCU----------GGACaGG- -5'
13226 3' -51.9 NC_003401.1 + 21466 0.66 0.988487
Target:  5'- gCUUCGGggaccgccGCGA---GGGCGAUCUGgggCCg -3'
miRNA:   3'- -GGAGCC--------UGCUuuaCCUGCUGGACa--GG- -5'
13226 3' -51.9 NC_003401.1 + 129302 0.66 0.988487
Target:  5'- uCCUCGGGCGuuccugGGGUGGugGGugugGUCUc -3'
miRNA:   3'- -GGAGCCUGC------UUUACCugCUgga-CAGG- -5'
13226 3' -51.9 NC_003401.1 + 13504 0.66 0.986966
Target:  5'- aCCUgaacCGcGACcgccUGGcccGCGACCUGUCCg -3'
miRNA:   3'- -GGA----GC-CUGcuuuACC---UGCUGGACAGG- -5'
13226 3' -51.9 NC_003401.1 + 68956 0.66 0.986966
Target:  5'- -gUCGuGACuGGAAguacuagcgGGAUGACgUGUCCg -3'
miRNA:   3'- ggAGC-CUG-CUUUa--------CCUGCUGgACAGG- -5'
13226 3' -51.9 NC_003401.1 + 127701 0.66 0.985296
Target:  5'- aCCUgGGAgcccUGGucucGcgGGGCGGCCUGcgCCu -3'
miRNA:   3'- -GGAgCCU----GCU----UuaCCUGCUGGACa-GG- -5'
13226 3' -51.9 NC_003401.1 + 108844 0.67 0.983466
Target:  5'- gCCUCGcuGCGAGAacUGGcgcCGACC-GUCCc -3'
miRNA:   3'- -GGAGCc-UGCUUU--ACCu--GCUGGaCAGG- -5'
13226 3' -51.9 NC_003401.1 + 91693 0.67 0.981469
Target:  5'- cCCUCGGGaucggcaccuucCGAGAgauugcccgGGACGGCauuauuccgGUCCg -3'
miRNA:   3'- -GGAGCCU------------GCUUUa--------CCUGCUGga-------CAGG- -5'
13226 3' -51.9 NC_003401.1 + 73641 0.67 0.979297
Target:  5'- cCC-CGGua-AAGUGuGACGACCUGUUUa -3'
miRNA:   3'- -GGaGCCugcUUUAC-CUGCUGGACAGG- -5'
13226 3' -51.9 NC_003401.1 + 48414 0.68 0.968698
Target:  5'- aUCUCGGuGCGcgucgGGGCGAuuaCUUGUCCc -3'
miRNA:   3'- -GGAGCC-UGCuuua-CCUGCU---GGACAGG- -5'
13226 3' -51.9 NC_003401.1 + 132405 0.68 0.968698
Target:  5'- gCCcCGGGCGcaAGAUGG-CGGCCgcgGcCCg -3'
miRNA:   3'- -GGaGCCUGC--UUUACCuGCUGGa--CaGG- -5'
13226 3' -51.9 NC_003401.1 + 42721 0.68 0.964544
Target:  5'- --gCGGGCGuGAUGGugGaagaauaaccgagcGCCaUGUCCa -3'
miRNA:   3'- ggaGCCUGCuUUACCugC--------------UGG-ACAGG- -5'
13226 3' -51.9 NC_003401.1 + 101286 0.68 0.954714
Target:  5'- aUCUCGGACaaacaAAAcGGGCGAgCcGUCCg -3'
miRNA:   3'- -GGAGCCUGc----UUUaCCUGCUgGaCAGG- -5'
13226 3' -51.9 NC_003401.1 + 16954 0.69 0.948092
Target:  5'- aCUCGGugGAgaacguuaacugcucGAUGGgcACGACgCUGUUUc -3'
miRNA:   3'- gGAGCCugCU---------------UUACC--UGCUG-GACAGG- -5'
13226 3' -51.9 NC_003401.1 + 51629 0.69 0.941797
Target:  5'- gUCUCGGGgacgUGGAAgcGGAUGAcgcauaCCUGUCCg -3'
miRNA:   3'- -GGAGCCU----GCUUUa-CCUGCU------GGACAGG- -5'
13226 3' -51.9 NC_003401.1 + 107220 0.69 0.93198
Target:  5'- cCCgaacCGGACGAcuccaGGUGGACcGCCccgcucgGUCCa -3'
miRNA:   3'- -GGa---GCCUGCU-----UUACCUGcUGGa------CAGG- -5'
13226 3' -51.9 NC_003401.1 + 83380 0.7 0.926704
Target:  5'- --aCGcGGCGAGgauAUGGAgCGGCCgGUCCg -3'
miRNA:   3'- ggaGC-CUGCUU---UACCU-GCUGGaCAGG- -5'
13226 3' -51.9 NC_003401.1 + 119507 0.7 0.909406
Target:  5'- cCCUCGGGCGuaucgucGGACGccgGCCgGUCa -3'
miRNA:   3'- -GGAGCCUGCuuua---CCUGC---UGGaCAGg -5'
13226 3' -51.9 NC_003401.1 + 7030 0.7 0.903154
Target:  5'- ---aGGGCGAGcucgGcGACGACgCUGUCCa -3'
miRNA:   3'- ggagCCUGCUUua--C-CUGCUG-GACAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.