Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13226 | 3' | -51.9 | NC_003401.1 | + | 7030 | 0.7 | 0.903154 |
Target: 5'- ---aGGGCGAGcucgGcGACGACgCUGUCCa -3' miRNA: 3'- ggagCCUGCUUua--C-CUGCUG-GACAGG- -5' |
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13226 | 3' | -51.9 | NC_003401.1 | + | 13504 | 0.66 | 0.986966 |
Target: 5'- aCCUgaacCGcGACcgccUGGcccGCGACCUGUCCg -3' miRNA: 3'- -GGA----GC-CUGcuuuACC---UGCUGGACAGG- -5' |
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13226 | 3' | -51.9 | NC_003401.1 | + | 15927 | 0.66 | 0.991113 |
Target: 5'- cCCUCGGGCGuuGgaaccgGGAgGAuaaaguucucCCUGgCCg -3' miRNA: 3'- -GGAGCCUGCuuUa-----CCUgCU----------GGACaGG- -5' |
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13226 | 3' | -51.9 | NC_003401.1 | + | 16954 | 0.69 | 0.948092 |
Target: 5'- aCUCGGugGAgaacguuaacugcucGAUGGgcACGACgCUGUUUc -3' miRNA: 3'- gGAGCCugCU---------------UUACC--UGCUG-GACAGG- -5' |
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13226 | 3' | -51.9 | NC_003401.1 | + | 21466 | 0.66 | 0.988487 |
Target: 5'- gCUUCGGggaccgccGCGA---GGGCGAUCUGgggCCg -3' miRNA: 3'- -GGAGCC--------UGCUuuaCCUGCUGGACa--GG- -5' |
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13226 | 3' | -51.9 | NC_003401.1 | + | 21683 | 0.66 | 0.991113 |
Target: 5'- ---aGGACGGGcGUGGGC-ACCagGUCCg -3' miRNA: 3'- ggagCCUGCUU-UACCUGcUGGa-CAGG- -5' |
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13226 | 3' | -51.9 | NC_003401.1 | + | 42605 | 0.73 | 0.810749 |
Target: 5'- aCCUCGGAC---AUGGGCGuucaCUGUCa -3' miRNA: 3'- -GGAGCCUGcuuUACCUGCug--GACAGg -5' |
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13226 | 3' | -51.9 | NC_003401.1 | + | 42721 | 0.68 | 0.964544 |
Target: 5'- --gCGGGCGuGAUGGugGaagaauaaccgagcGCCaUGUCCa -3' miRNA: 3'- ggaGCCUGCuUUACCugC--------------UGG-ACAGG- -5' |
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13226 | 3' | -51.9 | NC_003401.1 | + | 44049 | 0.83 | 0.311849 |
Target: 5'- --gCGGAUGc--UGGACGACCUGUCCa -3' miRNA: 3'- ggaGCCUGCuuuACCUGCUGGACAGG- -5' |
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13226 | 3' | -51.9 | NC_003401.1 | + | 48414 | 0.68 | 0.968698 |
Target: 5'- aUCUCGGuGCGcgucgGGGCGAuuaCUUGUCCc -3' miRNA: 3'- -GGAGCC-UGCuuua-CCUGCU---GGACAGG- -5' |
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13226 | 3' | -51.9 | NC_003401.1 | + | 51629 | 0.69 | 0.941797 |
Target: 5'- gUCUCGGGgacgUGGAAgcGGAUGAcgcauaCCUGUCCg -3' miRNA: 3'- -GGAGCCU----GCUUUa-CCUGCU------GGACAGG- -5' |
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13226 | 3' | -51.9 | NC_003401.1 | + | 63812 | 0.71 | 0.875783 |
Target: 5'- ----cGACGAAGUGGACGACCgagGcUCUg -3' miRNA: 3'- ggagcCUGCUUUACCUGCUGGa--C-AGG- -5' |
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13226 | 3' | -51.9 | NC_003401.1 | + | 63972 | 0.78 | 0.520548 |
Target: 5'- gCUCGGugGu-GUGGugGcACCUGUCg -3' miRNA: 3'- gGAGCCugCuuUACCugC-UGGACAGg -5' |
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13226 | 3' | -51.9 | NC_003401.1 | + | 68956 | 0.66 | 0.986966 |
Target: 5'- -gUCGuGACuGGAAguacuagcgGGAUGACgUGUCCg -3' miRNA: 3'- ggAGC-CUG-CUUUa--------CCUGCUGgACAGG- -5' |
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13226 | 3' | -51.9 | NC_003401.1 | + | 73641 | 0.67 | 0.979297 |
Target: 5'- cCC-CGGua-AAGUGuGACGACCUGUUUa -3' miRNA: 3'- -GGaGCCugcUUUAC-CUGCUGGACAGG- -5' |
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13226 | 3' | -51.9 | NC_003401.1 | + | 77570 | 1.13 | 0.004341 |
Target: 5'- uCCUCGGACGAAAUGGACGACCUGUCCc -3' miRNA: 3'- -GGAGCCUGCUUUACCUGCUGGACAGG- -5' |
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13226 | 3' | -51.9 | NC_003401.1 | + | 83380 | 0.7 | 0.926704 |
Target: 5'- --aCGcGGCGAGgauAUGGAgCGGCCgGUCCg -3' miRNA: 3'- ggaGC-CUGCUU---UACCU-GCUGGaCAGG- -5' |
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13226 | 3' | -51.9 | NC_003401.1 | + | 91693 | 0.67 | 0.981469 |
Target: 5'- cCCUCGGGaucggcaccuucCGAGAgauugcccgGGACGGCauuauuccgGUCCg -3' miRNA: 3'- -GGAGCCU------------GCUUUa--------CCUGCUGga-------CAGG- -5' |
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13226 | 3' | -51.9 | NC_003401.1 | + | 101286 | 0.68 | 0.954714 |
Target: 5'- aUCUCGGACaaacaAAAcGGGCGAgCcGUCCg -3' miRNA: 3'- -GGAGCCUGc----UUUaCCUGCUgGaCAGG- -5' |
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13226 | 3' | -51.9 | NC_003401.1 | + | 107220 | 0.69 | 0.93198 |
Target: 5'- cCCgaacCGGACGAcuccaGGUGGACcGCCccgcucgGUCCa -3' miRNA: 3'- -GGa---GCCUGCU-----UUACCUGcUGGa------CAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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