miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13226 5' -55.6 NC_003401.1 + 7019 0.66 0.923623
Target:  5'- uGGucGGCCGaacaGGCCGUUCACGugGCgGGu -3'
miRNA:   3'- -CC--UCGGUc---UUGGCAGGUGUugCGgCU- -5'
13226 5' -55.6 NC_003401.1 + 72343 0.66 0.923623
Target:  5'- gGGGGU--GAACCaGgugCCACGGCGUCGGc -3'
miRNA:   3'- -CCUCGguCUUGG-Ca--GGUGUUGCGGCU- -5'
13226 5' -55.6 NC_003401.1 + 27560 0.66 0.918024
Target:  5'- cGGGGCCcgcgcGGACUGUCCGCAuu-CUGGa -3'
miRNA:   3'- -CCUCGGu----CUUGGCAGGUGUugcGGCU- -5'
13226 5' -55.6 NC_003401.1 + 125066 0.66 0.918024
Target:  5'- gGGAgGCCAGGuggcgcCCGUCCggugacgugaugGCGGCcacgGCCGAg -3'
miRNA:   3'- -CCU-CGGUCUu-----GGCAGG------------UGUUG----CGGCU- -5'
13226 5' -55.6 NC_003401.1 + 87308 0.66 0.912187
Target:  5'- gGGAGCUGacACCG-CCgaGCAAgGCCGGg -3'
miRNA:   3'- -CCUCGGUcuUGGCaGG--UGUUgCGGCU- -5'
13226 5' -55.6 NC_003401.1 + 9046 0.66 0.912187
Target:  5'- gGGAGCuuuccggccaCAGGuuGCgGUCCACGccGCGCCc- -3'
miRNA:   3'- -CCUCG----------GUCU--UGgCAGGUGU--UGCGGcu -5'
13226 5' -55.6 NC_003401.1 + 64502 0.66 0.906111
Target:  5'- -cGGCCAGGgagaACCGguugCCGCGugGgCGGu -3'
miRNA:   3'- ccUCGGUCU----UGGCa---GGUGUugCgGCU- -5'
13226 5' -55.6 NC_003401.1 + 109148 0.66 0.906111
Target:  5'- -cGGCguGGGCUGUCC-CAGCGaCGAa -3'
miRNA:   3'- ccUCGguCUUGGCAGGuGUUGCgGCU- -5'
13226 5' -55.6 NC_003401.1 + 11232 0.66 0.906111
Target:  5'- uGGGCCAGcGCgaCGUUgGCGGgGCCGGg -3'
miRNA:   3'- cCUCGGUCuUG--GCAGgUGUUgCGGCU- -5'
13226 5' -55.6 NC_003401.1 + 16513 0.66 0.90549
Target:  5'- gGGAGUCGGugucACCGUagacgacgcgaaaCCGCG-CGCCGu -3'
miRNA:   3'- -CCUCGGUCu---UGGCA-------------GGUGUuGCGGCu -5'
13226 5' -55.6 NC_003401.1 + 95566 0.66 0.904242
Target:  5'- cGGAGgucagcuuuCUAGcuguuuuauuuuaaAGCCGUCCAUGGCGaCCGAa -3'
miRNA:   3'- -CCUC---------GGUC--------------UUGGCAGGUGUUGC-GGCU- -5'
13226 5' -55.6 NC_003401.1 + 104200 0.66 0.904242
Target:  5'- uGAGCgAGGuagaaaaacagagcACCGUCgCGCAGCGUCu- -3'
miRNA:   3'- cCUCGgUCU--------------UGGCAG-GUGUUGCGGcu -5'
13226 5' -55.6 NC_003401.1 + 108152 0.66 0.899799
Target:  5'- aGGAGCCA--AUCGUUCAgGgACGCCu- -3'
miRNA:   3'- -CCUCGGUcuUGGCAGGUgU-UGCGGcu -5'
13226 5' -55.6 NC_003401.1 + 132666 0.66 0.899799
Target:  5'- gGGGGCCGGGGC---CCGgGGCGCCu- -3'
miRNA:   3'- -CCUCGGUCUUGgcaGGUgUUGCGGcu -5'
13226 5' -55.6 NC_003401.1 + 21469 0.67 0.886481
Target:  5'- aGGGCUucgGGGACCG-CCGCGAgGgCGAu -3'
miRNA:   3'- cCUCGG---UCUUGGCaGGUGUUgCgGCU- -5'
13226 5' -55.6 NC_003401.1 + 15296 0.67 0.886481
Target:  5'- cGGuGuCCGGGAUggggucgcaCGUCC-CGACGCUGAa -3'
miRNA:   3'- -CCuC-GGUCUUG---------GCAGGuGUUGCGGCU- -5'
13226 5' -55.6 NC_003401.1 + 15836 0.67 0.87948
Target:  5'- cGGGGUUuuacgacGAGCCgGUCCugGugGUCGAu -3'
miRNA:   3'- -CCUCGGu------CUUGG-CAGGugUugCGGCU- -5'
13226 5' -55.6 NC_003401.1 + 132536 0.67 0.87948
Target:  5'- cGGGcCCGGGGCCccacaagCCGCGGCGCgCGGc -3'
miRNA:   3'- cCUC-GGUCUUGGca-----GGUGUUGCG-GCU- -5'
13226 5' -55.6 NC_003401.1 + 81816 0.67 0.878768
Target:  5'- cGAGCCAGGcccugauAUCGaUCCACGGCccGCCa- -3'
miRNA:   3'- cCUCGGUCU-------UGGC-AGGUGUUG--CGGcu -5'
13226 5' -55.6 NC_003401.1 + 115736 0.67 0.86931
Target:  5'- cGGAGCC-GAGCCGcccccacccggagCCACcccggaGCCGAg -3'
miRNA:   3'- -CCUCGGuCUUGGCa------------GGUGuug---CGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.