miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13227 3' -61.6 NC_003401.1 + 118825 0.66 0.678139
Target:  5'- aGCGuuGCCACCuGUUGCGGagauccCCCGuGc -3'
miRNA:   3'- cCGCggCGGUGG-CGACGUU------GGGCuCc -5'
13227 3' -61.6 NC_003401.1 + 37217 0.66 0.678139
Target:  5'- cGCGaaGCCaagGCCGCUGCGguuCCUGAa- -3'
miRNA:   3'- cCGCggCGG---UGGCGACGUu--GGGCUcc -5'
13227 3' -61.6 NC_003401.1 + 118444 0.66 0.668347
Target:  5'- aGGCcgGCCgGCCAaaGgUGCGAUCgCGGGGu -3'
miRNA:   3'- -CCG--CGG-CGGUggCgACGUUGG-GCUCC- -5'
13227 3' -61.6 NC_003401.1 + 69269 0.66 0.668347
Target:  5'- uGGcCGCCGCacuaACCGguucgacauCUGCGGCCCcuGGc -3'
miRNA:   3'- -CC-GCGGCGg---UGGC---------GACGUUGGGcuCC- -5'
13227 3' -61.6 NC_003401.1 + 18968 0.66 0.668347
Target:  5'- cGCGCUGaCAgaCGCgUGCAGCCagGAGGg -3'
miRNA:   3'- cCGCGGCgGUg-GCG-ACGUUGGg-CUCC- -5'
13227 3' -61.6 NC_003401.1 + 108289 0.66 0.658528
Target:  5'- uGGCGUCGCCggACUGC-GCGACCgGc-- -3'
miRNA:   3'- -CCGCGGCGG--UGGCGaCGUUGGgCucc -5'
13227 3' -61.6 NC_003401.1 + 119954 0.66 0.658528
Target:  5'- cGGUGCCGCUgcGCCGCcucCGGCCagauuggcgGAGGc -3'
miRNA:   3'- -CCGCGGCGG--UGGCGac-GUUGGg--------CUCC- -5'
13227 3' -61.6 NC_003401.1 + 80417 0.66 0.648689
Target:  5'- gGGCGCCagguaGCCAUgGCUGUauAugCC-AGGu -3'
miRNA:   3'- -CCGCGG-----CGGUGgCGACG--UugGGcUCC- -5'
13227 3' -61.6 NC_003401.1 + 111927 0.66 0.648689
Target:  5'- aGCGCCGUacgCACCuaGCgucagGCGACCgGAcGGg -3'
miRNA:   3'- cCGCGGCG---GUGG--CGa----CGUUGGgCU-CC- -5'
13227 3' -61.6 NC_003401.1 + 132385 0.66 0.632925
Target:  5'- cGCGCCGCgCGCCGg-GCcgcuuucgguucgcgGGgCCGGGGg -3'
miRNA:   3'- cCGCGGCG-GUGGCgaCG---------------UUgGGCUCC- -5'
13227 3' -61.6 NC_003401.1 + 30740 0.66 0.628982
Target:  5'- aGCGUCGCCA--GCUuuGugCCGAGGu -3'
miRNA:   3'- cCGCGGCGGUggCGAcgUugGGCUCC- -5'
13227 3' -61.6 NC_003401.1 + 107718 0.66 0.628982
Target:  5'- gGGUGgagGCCACCGggGCAacGCUCGGGGc -3'
miRNA:   3'- -CCGCgg-CGGUGGCgaCGU--UGGGCUCC- -5'
13227 3' -61.6 NC_003401.1 + 132531 0.67 0.619129
Target:  5'- cGGCGCgCGgCGCgGg-GCGGCCgGGGGc -3'
miRNA:   3'- -CCGCG-GCgGUGgCgaCGUUGGgCUCC- -5'
13227 3' -61.6 NC_003401.1 + 132837 0.67 0.599456
Target:  5'- cGCGCCggGCC-CCGCcgagGCGcCCCGGGc -3'
miRNA:   3'- cCGCGG--CGGuGGCGa---CGUuGGGCUCc -5'
13227 3' -61.6 NC_003401.1 + 17645 0.67 0.599456
Target:  5'- cGCGCCGCguCCGCgucGCcGCCgGAa- -3'
miRNA:   3'- cCGCGGCGguGGCGa--CGuUGGgCUcc -5'
13227 3' -61.6 NC_003401.1 + 23321 0.67 0.599456
Target:  5'- -aCGCCcCCGCC-CUGCAcccggcucCCCGAGGu -3'
miRNA:   3'- ccGCGGcGGUGGcGACGUu-------GGGCUCC- -5'
13227 3' -61.6 NC_003401.1 + 122089 0.67 0.598474
Target:  5'- cGCGCCaGCCGCCGCacccGCGcccCCCGcuccaacaacaucAGGg -3'
miRNA:   3'- cCGCGG-CGGUGGCGa---CGUu--GGGC-------------UCC- -5'
13227 3' -61.6 NC_003401.1 + 132390 0.67 0.58965
Target:  5'- uGGCgGCCGCgGCCcgGCgGCGGCgCCGGccGGg -3'
miRNA:   3'- -CCG-CGGCGgUGG--CGaCGUUG-GGCU--CC- -5'
13227 3' -61.6 NC_003401.1 + 23817 0.67 0.579872
Target:  5'- cGGCGCgGCCAUuggaCGCUggcgGCAGCCaauGGg -3'
miRNA:   3'- -CCGCGgCGGUG----GCGA----CGUUGGgcuCC- -5'
13227 3' -61.6 NC_003401.1 + 68524 0.67 0.579872
Target:  5'- cGGgGCCGCCACCuGUaacgucccgUGCGcagaaugcGCCC-AGGg -3'
miRNA:   3'- -CCgCGGCGGUGG-CG---------ACGU--------UGGGcUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.