miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13227 3' -61.6 NC_003401.1 + 64473 0.67 0.579872
Target:  5'- -cCGCCgGCCACUcccaggauGCUGCcgauuCCCGGGGc -3'
miRNA:   3'- ccGCGG-CGGUGG--------CGACGuu---GGGCUCC- -5'
13227 3' -61.6 NC_003401.1 + 79889 0.67 0.570129
Target:  5'- uGCGUguuuggCGCCAuCUGUUGaCGACCCGuGGg -3'
miRNA:   3'- cCGCG------GCGGU-GGCGAC-GUUGGGCuCC- -5'
13227 3' -61.6 NC_003401.1 + 105300 0.67 0.570129
Target:  5'- aGGCGCUGCCGCaccuaaCGCUagaGGCCC-AGGu -3'
miRNA:   3'- -CCGCGGCGGUG------GCGAcg-UUGGGcUCC- -5'
13227 3' -61.6 NC_003401.1 + 16687 0.68 0.560427
Target:  5'- aGCgGCCGCCGCaCGCgGUAua-CGAGGa -3'
miRNA:   3'- cCG-CGGCGGUG-GCGaCGUuggGCUCC- -5'
13227 3' -61.6 NC_003401.1 + 14878 0.68 0.560427
Target:  5'- cGCGCgCGCCAcgccCCGCcugGCGGCCaGAGa -3'
miRNA:   3'- cCGCG-GCGGU----GGCGa--CGUUGGgCUCc -5'
13227 3' -61.6 NC_003401.1 + 18902 0.68 0.550771
Target:  5'- uGGCGaUCGUUACgGUggUGCGcccGCCCGGGGu -3'
miRNA:   3'- -CCGC-GGCGGUGgCG--ACGU---UGGGCUCC- -5'
13227 3' -61.6 NC_003401.1 + 106261 0.68 0.541166
Target:  5'- aGGC-CCGCCACUGgaGUAcguuGCCguuaCGAGGu -3'
miRNA:   3'- -CCGcGGCGGUGGCgaCGU----UGG----GCUCC- -5'
13227 3' -61.6 NC_003401.1 + 21832 0.68 0.541166
Target:  5'- cGGgGCCGaCCACagGC-GCGGCCCGGc- -3'
miRNA:   3'- -CCgCGGC-GGUGg-CGaCGUUGGGCUcc -5'
13227 3' -61.6 NC_003401.1 + 128938 0.68 0.541166
Target:  5'- ---cUCGCUggGCCGCUGCAGCCCuuaguccagaaGAGGa -3'
miRNA:   3'- ccgcGGCGG--UGGCGACGUUGGG-----------CUCC- -5'
13227 3' -61.6 NC_003401.1 + 79562 0.68 0.540209
Target:  5'- aGGCGCCGggggcaaCCACaacuGaaGCGGCCCGGGa -3'
miRNA:   3'- -CCGCGGC-------GGUGg---CgaCGUUGGGCUCc -5'
13227 3' -61.6 NC_003401.1 + 125735 0.68 0.522132
Target:  5'- gGGUGaccaaggCGCCACUGCUgGCGGCCuCGAcGGc -3'
miRNA:   3'- -CCGCg------GCGGUGGCGA-CGUUGG-GCU-CC- -5'
13227 3' -61.6 NC_003401.1 + 118197 0.68 0.522132
Target:  5'- cGGCGgCGgCACCGCggGCG-CUgGGGGu -3'
miRNA:   3'- -CCGCgGCgGUGGCGa-CGUuGGgCUCC- -5'
13227 3' -61.6 NC_003401.1 + 117729 0.68 0.522132
Target:  5'- uGGCGCggUGCCACCGCcGCcgAACCCc--- -3'
miRNA:   3'- -CCGCG--GCGGUGGCGaCG--UUGGGcucc -5'
13227 3' -61.6 NC_003401.1 + 80019 0.68 0.522132
Target:  5'- -cUGCCGCUACCcCaGaGGCCCGAGGg -3'
miRNA:   3'- ccGCGGCGGUGGcGaCgUUGGGCUCC- -5'
13227 3' -61.6 NC_003401.1 + 126171 0.68 0.522132
Target:  5'- -cUGCCggGCCACCGUgUGCGGCaCCGuGGg -3'
miRNA:   3'- ccGCGG--CGGUGGCG-ACGUUG-GGCuCC- -5'
13227 3' -61.6 NC_003401.1 + 51613 0.68 0.512712
Target:  5'- cGCGCaGCCAUCGCU-CGuCUCGGGGa -3'
miRNA:   3'- cCGCGgCGGUGGCGAcGUuGGGCUCC- -5'
13227 3' -61.6 NC_003401.1 + 132652 0.68 0.503362
Target:  5'- cGCGCCGCCGggagggggGCcGgGGCCCGGGGc -3'
miRNA:   3'- cCGCGGCGGUgg------CGaCgUUGGGCUCC- -5'
13227 3' -61.6 NC_003401.1 + 32497 0.68 0.503362
Target:  5'- gGGaCGCgCGCCACCGCccgGCAccaccGCCCuuuuAGGc -3'
miRNA:   3'- -CC-GCG-GCGGUGGCGa--CGU-----UGGGc---UCC- -5'
13227 3' -61.6 NC_003401.1 + 132440 0.68 0.502431
Target:  5'- cGGgGCCGCCcccggguGCCGCUccGCcgGGCCCGGc- -3'
miRNA:   3'- -CCgCGGCGG-------UGGCGA--CG--UUGGGCUcc -5'
13227 3' -61.6 NC_003401.1 + 118880 0.69 0.494088
Target:  5'- cGCGCCGCCaaGCgGC-GCGGCCgguucUGGGGa -3'
miRNA:   3'- cCGCGGCGG--UGgCGaCGUUGG-----GCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.