miRNA display CGI


Results 1 - 20 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13227 3' -61.6 NC_003401.1 + 770 0.7 0.414563
Target:  5'- gGGCuGCCgGCCAgCUGCgUGCGAgggcgUCCGAGGg -3'
miRNA:   3'- -CCG-CGG-CGGU-GGCG-ACGUU-----GGGCUCC- -5'
13227 3' -61.6 NC_003401.1 + 8014 0.69 0.479413
Target:  5'- cGGCGCCuGCCAauacaCGUUGCAGCagaacuggaguaugUGAGGa -3'
miRNA:   3'- -CCGCGG-CGGUg----GCGACGUUGg-------------GCUCC- -5'
13227 3' -61.6 NC_003401.1 + 8756 0.69 0.448968
Target:  5'- cGGuCGCCGCCACagggCGcCUGCGuCCCGuGa -3'
miRNA:   3'- -CC-GCGGCGGUG----GC-GACGUuGGGCuCc -5'
13227 3' -61.6 NC_003401.1 + 9309 0.7 0.397979
Target:  5'- aGCGacgauaUCGCCACCGCUuccugucaGCccCCCGAGGa -3'
miRNA:   3'- cCGC------GGCGGUGGCGA--------CGuuGGGCUCC- -5'
13227 3' -61.6 NC_003401.1 + 9511 0.71 0.373917
Target:  5'- gGGCGCCGgCGCUaggggucgguaGCUGUucCUCGGGGg -3'
miRNA:   3'- -CCGCGGCgGUGG-----------CGACGuuGGGCUCC- -5'
13227 3' -61.6 NC_003401.1 + 10824 0.7 0.423013
Target:  5'- cGGuUGCCGCCACgGUggugguccGUGGCuCCGAGGg -3'
miRNA:   3'- -CC-GCGGCGGUGgCGa-------CGUUG-GGCUCC- -5'
13227 3' -61.6 NC_003401.1 + 14878 0.68 0.560427
Target:  5'- cGCGCgCGCCAcgccCCGCcugGCGGCCaGAGa -3'
miRNA:   3'- cCGCG-GCGGU----GGCGa--CGUUGGgCUCc -5'
13227 3' -61.6 NC_003401.1 + 16687 0.68 0.560427
Target:  5'- aGCgGCCGCCGCaCGCgGUAua-CGAGGa -3'
miRNA:   3'- cCG-CGGCGGUG-GCGaCGUuggGCUCC- -5'
13227 3' -61.6 NC_003401.1 + 17645 0.67 0.599456
Target:  5'- cGCGCCGCguCCGCgucGCcGCCgGAa- -3'
miRNA:   3'- cCGCGGCGguGGCGa--CGuUGGgCUcc -5'
13227 3' -61.6 NC_003401.1 + 18298 0.7 0.440218
Target:  5'- --gGCCGCCGCCGCgcccUGC--CCCGuGGu -3'
miRNA:   3'- ccgCGGCGGUGGCG----ACGuuGGGCuCC- -5'
13227 3' -61.6 NC_003401.1 + 18902 0.68 0.550771
Target:  5'- uGGCGaUCGUUACgGUggUGCGcccGCCCGGGGu -3'
miRNA:   3'- -CCGC-GGCGGUGgCG--ACGU---UGGGCUCC- -5'
13227 3' -61.6 NC_003401.1 + 18968 0.66 0.668347
Target:  5'- cGCGCUGaCAgaCGCgUGCAGCCagGAGGg -3'
miRNA:   3'- cCGCGGCgGUg-GCG-ACGUUGGg-CUCC- -5'
13227 3' -61.6 NC_003401.1 + 21478 0.7 0.403735
Target:  5'- uGGCGgCGCagggcuucggggacCGCCGCgaggGCGAUCUGGGGc -3'
miRNA:   3'- -CCGCgGCG--------------GUGGCGa---CGUUGGGCUCC- -5'
13227 3' -61.6 NC_003401.1 + 21786 0.7 0.397979
Target:  5'- aGGUGCCgcgGCCGuCCGCUGCgcGugCCGcGGc -3'
miRNA:   3'- -CCGCGG---CGGU-GGCGACG--UugGGCuCC- -5'
13227 3' -61.6 NC_003401.1 + 21832 0.68 0.541166
Target:  5'- cGGgGCCGaCCACagGC-GCGGCCCGGc- -3'
miRNA:   3'- -CCgCGGC-GGUGg-CGaCGUUGGGCUcc -5'
13227 3' -61.6 NC_003401.1 + 23321 0.67 0.599456
Target:  5'- -aCGCCcCCGCC-CUGCAcccggcucCCCGAGGu -3'
miRNA:   3'- ccGCGGcGGUGGcGACGUu-------GGGCUCC- -5'
13227 3' -61.6 NC_003401.1 + 23800 0.71 0.381827
Target:  5'- cGGCGCCaccuGCCgGCCGCUcGCGgcGCCCGuGu -3'
miRNA:   3'- -CCGCGG----CGG-UGGCGA-CGU--UGGGCuCc -5'
13227 3' -61.6 NC_003401.1 + 23817 0.67 0.579872
Target:  5'- cGGCGCgGCCAUuggaCGCUggcgGCAGCCaauGGg -3'
miRNA:   3'- -CCGCGgCGGUG----GCGA----CGUUGGgcuCC- -5'
13227 3' -61.6 NC_003401.1 + 23849 0.7 0.443706
Target:  5'- cGGCGCUGCCGguCCGCcauuuugccaaaucGCGGCgUGGGGg -3'
miRNA:   3'- -CCGCGGCGGU--GGCGa-------------CGUUGgGCUCC- -5'
13227 3' -61.6 NC_003401.1 + 28216 0.69 0.484892
Target:  5'- uGGauaCGCCGCCGUUGCcGGCaUCGAGGg -3'
miRNA:   3'- -CCgcgGCGGUGGCGACG-UUG-GGCUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.