miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13229 5' -56 NC_003401.1 + 56185 0.66 0.877396
Target:  5'- -aUGCGUGggccauccuggccauAUUCAAGGCcaAGCGCGUg -3'
miRNA:   3'- uaACGCGU---------------UGAGUUCCGccUCGCGCG- -5'
13229 5' -56 NC_003401.1 + 28933 0.66 0.874449
Target:  5'- gAUUGUGUGACUacguGGGCuucGGGGaCGUGCu -3'
miRNA:   3'- -UAACGCGUUGAgu--UCCG---CCUC-GCGCG- -5'
13229 5' -56 NC_003401.1 + 61346 0.66 0.874449
Target:  5'- -cUGUGCGGCUau-GGUGGu-CGCGCc -3'
miRNA:   3'- uaACGCGUUGAguuCCGCCucGCGCG- -5'
13229 5' -56 NC_003401.1 + 132725 0.66 0.874449
Target:  5'- --gGCGCGGC-CGcccGGCaucgGGAGCcGCGCg -3'
miRNA:   3'- uaaCGCGUUGaGUu--CCG----CCUCG-CGCG- -5'
13229 5' -56 NC_003401.1 + 58704 0.66 0.874449
Target:  5'- ---cCGC-ACUaGGGGCGGAaCGCGCa -3'
miRNA:   3'- uaacGCGuUGAgUUCCGCCUcGCGCG- -5'
13229 5' -56 NC_003401.1 + 82414 0.66 0.874449
Target:  5'- --gGCGUAcCUaCAcccgaGGGCGGAGUGCa- -3'
miRNA:   3'- uaaCGCGUuGA-GU-----UCCGCCUCGCGcg -5'
13229 5' -56 NC_003401.1 + 23476 0.66 0.874449
Target:  5'- --aGC-CGGgUgCAGGGCgGGGGCGUGCu -3'
miRNA:   3'- uaaCGcGUUgA-GUUCCG-CCUCGCGCG- -5'
13229 5' -56 NC_003401.1 + 122305 0.66 0.866925
Target:  5'- -gUGCGCGcGCUC-AGGUGGcuGCGgGUc -3'
miRNA:   3'- uaACGCGU-UGAGuUCCGCCu-CGCgCG- -5'
13229 5' -56 NC_003401.1 + 122531 0.66 0.866925
Target:  5'- --gGCGaCAAggUAAGGgGGccgcGGCGCGCg -3'
miRNA:   3'- uaaCGC-GUUgaGUUCCgCC----UCGCGCG- -5'
13229 5' -56 NC_003401.1 + 28160 0.66 0.866925
Target:  5'- --gGCGCGAC---GGGCGGuGCGUa- -3'
miRNA:   3'- uaaCGCGUUGaguUCCGCCuCGCGcg -5'
13229 5' -56 NC_003401.1 + 21821 0.66 0.859181
Target:  5'- ----gGCAGCUU-GGGCGGGGCcgaccacagGCGCg -3'
miRNA:   3'- uaacgCGUUGAGuUCCGCCUCG---------CGCG- -5'
13229 5' -56 NC_003401.1 + 122114 0.66 0.859181
Target:  5'- --gGCGCGGCagGGGGCGuGGCacggccGCGCc -3'
miRNA:   3'- uaaCGCGUUGagUUCCGCcUCG------CGCG- -5'
13229 5' -56 NC_003401.1 + 42488 0.66 0.843055
Target:  5'- -aUGCGUcgggAAgUCAGGGCGGA-CGCa- -3'
miRNA:   3'- uaACGCG----UUgAGUUCCGCCUcGCGcg -5'
13229 5' -56 NC_003401.1 + 132690 0.66 0.834688
Target:  5'- --gGCGgGGCcCGGcGCGGGGCGCGa -3'
miRNA:   3'- uaaCGCgUUGaGUUcCGCCUCGCGCg -5'
13229 5' -56 NC_003401.1 + 17693 0.66 0.834688
Target:  5'- -cUGCGCGAC-CGAaagccugcccGGUGGAccccuGCGCGUc -3'
miRNA:   3'- uaACGCGUUGaGUU----------CCGCCU-----CGCGCG- -5'
13229 5' -56 NC_003401.1 + 114360 0.66 0.834688
Target:  5'- -gUGuUGUGAUUUggggAGGGCGGucAGCGCGCg -3'
miRNA:   3'- uaAC-GCGUUGAG----UUCCGCC--UCGCGCG- -5'
13229 5' -56 NC_003401.1 + 8514 0.66 0.834688
Target:  5'- --aGCGCGGCggucuuggugUCGGGGaacAGCGCGCg -3'
miRNA:   3'- uaaCGCGUUG----------AGUUCCgccUCGCGCG- -5'
13229 5' -56 NC_003401.1 + 42303 0.66 0.834688
Target:  5'- ---uUGCGAC-CAgcGGGUGGAGCGUGg -3'
miRNA:   3'- uaacGCGUUGaGU--UCCGCCUCGCGCg -5'
13229 5' -56 NC_003401.1 + 132447 0.67 0.808463
Target:  5'- --gGCGCccGGCgcgcGGGCccggGGGGCGCGCg -3'
miRNA:   3'- uaaCGCG--UUGagu-UCCG----CCUCGCGCG- -5'
13229 5' -56 NC_003401.1 + 37324 0.67 0.808463
Target:  5'- -aUGCGUuuugaaaagucaAACguacCAAGGCGG-GCgGCGCg -3'
miRNA:   3'- uaACGCG------------UUGa---GUUCCGCCuCG-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.