miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13232 3' -56.1 NC_003401.1 + 118599 0.66 0.877003
Target:  5'- uCGCACCUUuGGCCGGcCGGcCUCUGCc -3'
miRNA:   3'- -GUGUGGGAcUCGGUUaGCU-GAGGCGa -5'
13232 3' -56.1 NC_003401.1 + 105713 0.66 0.877003
Target:  5'- uGCAUCUcGGGUCAAUCGACgacgCCGg- -3'
miRNA:   3'- gUGUGGGaCUCGGUUAGCUGa---GGCga -5'
13232 3' -56.1 NC_003401.1 + 20101 0.66 0.869633
Target:  5'- -uCACCgCgGAGCCAAUggccgCGGCgUCCGCg -3'
miRNA:   3'- guGUGG-GaCUCGGUUA-----GCUG-AGGCGa -5'
13232 3' -56.1 NC_003401.1 + 14014 0.67 0.846234
Target:  5'- -cCGCCCgccaGAGCCGcgcggccaAUCGAUUCgCGCa -3'
miRNA:   3'- guGUGGGa---CUCGGU--------UAGCUGAG-GCGa -5'
13232 3' -56.1 NC_003401.1 + 71766 0.67 0.829628
Target:  5'- cCACuCCCgGuAGUaaAAUCGACUCCGCg -3'
miRNA:   3'- -GUGuGGGaC-UCGg-UUAGCUGAGGCGa -5'
13232 3' -56.1 NC_003401.1 + 10514 0.67 0.829628
Target:  5'- aACGCaCUGAGCCGggAUUG-CUCCGUg -3'
miRNA:   3'- gUGUGgGACUCGGU--UAGCuGAGGCGa -5'
13232 3' -56.1 NC_003401.1 + 95108 0.68 0.794273
Target:  5'- aCACGCCCUGAaaCAGguugUGACaCCGCUc -3'
miRNA:   3'- -GUGUGGGACUcgGUUa---GCUGaGGCGA- -5'
13232 3' -56.1 NC_003401.1 + 103914 0.68 0.785038
Target:  5'- aGCAUCUcgGcGGCCGAaCGGCUCCGCc -3'
miRNA:   3'- gUGUGGGa-C-UCGGUUaGCUGAGGCGa -5'
13232 3' -56.1 NC_003401.1 + 86837 0.68 0.766154
Target:  5'- gCACACCC-GAGCCGGcUCGcaaaauuugaACUCCGaCg -3'
miRNA:   3'- -GUGUGGGaCUCGGUU-AGC----------UGAGGC-Ga -5'
13232 3' -56.1 NC_003401.1 + 21796 0.68 0.746782
Target:  5'- cCGCACCCgaagGuGCCg--CGGCcgUCCGCUg -3'
miRNA:   3'- -GUGUGGGa---CuCGGuuaGCUG--AGGCGA- -5'
13232 3' -56.1 NC_003401.1 + 112065 0.69 0.736936
Target:  5'- gGCGCUCgaGAcGCCAAUCGACUUCuggGCUg -3'
miRNA:   3'- gUGUGGGa-CU-CGGUUAGCUGAGG---CGA- -5'
13232 3' -56.1 NC_003401.1 + 126989 0.71 0.624537
Target:  5'- uCGCACUgCUGAGCCA--CGAgUCCGUUg -3'
miRNA:   3'- -GUGUGG-GACUCGGUuaGCUgAGGCGA- -5'
13232 3' -56.1 NC_003401.1 + 106031 0.71 0.602808
Target:  5'- uCACACCacacgaAGCCGcccggucGUCGACUCCGCc -3'
miRNA:   3'- -GUGUGGgac---UCGGU-------UAGCUGAGGCGa -5'
13232 3' -56.1 NC_003401.1 + 20278 0.71 0.582204
Target:  5'- aCGCGCCCgggGAcgcggacgccgcgGCC-AUUGGCUCCGCg -3'
miRNA:   3'- -GUGUGGGa--CU-------------CGGuUAGCUGAGGCGa -5'
13232 3' -56.1 NC_003401.1 + 94365 1.07 0.00304
Target:  5'- aCACACCCUGAGCCAAUCGACUCCGCUc -3'
miRNA:   3'- -GUGUGGGACUCGGUUAGCUGAGGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.