miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13234 5' -44.7 NC_003401.1 + 88993 0.66 0.999995
Target:  5'- cGGGCAGGgucgaucCGCGuAAACCgGCCGu -3'
miRNA:   3'- -CUCGUUUaaaau--GUGC-UUUGGgUGGC- -5'
13234 5' -44.7 NC_003401.1 + 117947 0.66 0.999995
Target:  5'- gGGGCccauGGUggcGCGCGGccCCCACCGu -3'
miRNA:   3'- -CUCGu---UUAaaaUGUGCUuuGGGUGGC- -5'
13234 5' -44.7 NC_003401.1 + 3162 0.66 0.999995
Target:  5'- uGAGCAGAgaaUUACGUGAa--CCACCGc -3'
miRNA:   3'- -CUCGUUUaa-AAUGUGCUuugGGUGGC- -5'
13234 5' -44.7 NC_003401.1 + 122017 0.66 0.999993
Target:  5'- aGGGCAcgGAUcggACAcCGAAACggCCACCGa -3'
miRNA:   3'- -CUCGU--UUAaaaUGU-GCUUUG--GGUGGC- -5'
13234 5' -44.7 NC_003401.1 + 8819 0.66 0.999991
Target:  5'- uGGCGA---UUGcCGCGGAGCCCAgCa -3'
miRNA:   3'- cUCGUUuaaAAU-GUGCUUUGGGUgGc -5'
13234 5' -44.7 NC_003401.1 + 803 0.66 0.999987
Target:  5'- aGGGcCAGAcgaggACACGGGACCCggGCCu -3'
miRNA:   3'- -CUC-GUUUaaaa-UGUGCUUUGGG--UGGc -5'
13234 5' -44.7 NC_003401.1 + 133518 0.66 0.999987
Target:  5'- aGGGcCAGAcgaggACACGGGACCCggGCCu -3'
miRNA:   3'- -CUC-GUUUaaaa-UGUGCUUUGGG--UGGc -5'
13234 5' -44.7 NC_003401.1 + 42222 0.67 0.999981
Target:  5'- cGGCAAcgU---CACGAGACCUAUCu -3'
miRNA:   3'- cUCGUUuaAaauGUGCUUUGGGUGGc -5'
13234 5' -44.7 NC_003401.1 + 67199 0.67 0.999965
Target:  5'- gGAGaCAGAgucuaACugGAGAUCCAUCGu -3'
miRNA:   3'- -CUC-GUUUaaaa-UGugCUUUGGGUGGC- -5'
13234 5' -44.7 NC_003401.1 + 127934 0.67 0.999963
Target:  5'- uAGCucuGUggcgUGCGCGAGaaaaugcGCCCACUGa -3'
miRNA:   3'- cUCGuu-UAaa--AUGUGCUU-------UGGGUGGC- -5'
13234 5' -44.7 NC_003401.1 + 132689 0.67 0.999952
Target:  5'- cGGCGGGgcccgGCGCGggGCgCgACCGa -3'
miRNA:   3'- cUCGUUUaaaa-UGUGCuuUG-GgUGGC- -5'
13234 5' -44.7 NC_003401.1 + 29525 0.68 0.999935
Target:  5'- aGAGCAAcg-UUGCGucaGAAACCC-CCa -3'
miRNA:   3'- -CUCGUUuaaAAUGUg--CUUUGGGuGGc -5'
13234 5' -44.7 NC_003401.1 + 40420 0.68 0.999935
Target:  5'- cAGCGAAUg-UACaACGAGACCCAguuucccuucCCGu -3'
miRNA:   3'- cUCGUUUAaaAUG-UGCUUUGGGU----------GGC- -5'
13234 5' -44.7 NC_003401.1 + 43928 0.68 0.999913
Target:  5'- uGGCGGAg-----ACGAcGCCCACCGa -3'
miRNA:   3'- cUCGUUUaaaaugUGCUuUGGGUGGC- -5'
13234 5' -44.7 NC_003401.1 + 22178 0.68 0.999911
Target:  5'- uGAGC-------GCGCGAAugCCGCCu -3'
miRNA:   3'- -CUCGuuuaaaaUGUGCUUugGGUGGc -5'
13234 5' -44.7 NC_003401.1 + 22365 0.68 0.999793
Target:  5'- cGGCGAGUguuuaauauCACGGcgUCCACCGa -3'
miRNA:   3'- cUCGUUUAaaau-----GUGCUuuGGGUGGC- -5'
13234 5' -44.7 NC_003401.1 + 32965 0.69 0.999746
Target:  5'- aGAGCAAGUUUgcgcUACcguuucguGCGAcAgCCGCCGg -3'
miRNA:   3'- -CUCGUUUAAA----AUG--------UGCUuUgGGUGGC- -5'
13234 5' -44.7 NC_003401.1 + 83568 0.69 0.999675
Target:  5'- cGGGCAAGcUUUcuCAUGAAACCCAUg- -3'
miRNA:   3'- -CUCGUUUaAAAu-GUGCUUUGGGUGgc -5'
13234 5' -44.7 NC_003401.1 + 106139 0.69 0.999477
Target:  5'- aGAGCAGgccGUUUUACGUGAuGCCCggACCa -3'
miRNA:   3'- -CUCGUU---UAAAAUGUGCUuUGGG--UGGc -5'
13234 5' -44.7 NC_003401.1 + 24408 0.7 0.999164
Target:  5'- uAGUGG--UUUGCACGuguaaaaAAGCCCACCGa -3'
miRNA:   3'- cUCGUUuaAAAUGUGC-------UUUGGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.