miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13235 3' -54.6 NC_003401.1 + 122295 0.66 0.921723
Target:  5'- uCAGGU-GGCUGCGGGUcguggaaaGGGCAAUc -3'
miRNA:   3'- -GUCCGgCUGACGUCCAag------CCUGUUAu -5'
13235 3' -54.6 NC_003401.1 + 27534 0.66 0.918247
Target:  5'- gGGGCCGGCUGUgcgcuggccuccaccGGGgcccgcgCGGACu--- -3'
miRNA:   3'- gUCCGGCUGACG---------------UCCaa-----GCCUGuuau -5'
13235 3' -54.6 NC_003401.1 + 13703 0.66 0.915879
Target:  5'- -cGGCCGACaucgccCAGGUccgcgacuaucUCGGACAGg- -3'
miRNA:   3'- guCCGGCUGac----GUCCA-----------AGCCUGUUau -5'
13235 3' -54.6 NC_003401.1 + 133714 0.67 0.882913
Target:  5'- uGGGCCGGgUGCccggcGGUcCGGGCGGg- -3'
miRNA:   3'- gUCCGGCUgACGu----CCAaGCCUGUUau -5'
13235 3' -54.6 NC_003401.1 + 106879 0.67 0.872602
Target:  5'- --cGCCGGCguuugcggguuugGCGGGUUCGGugAGc- -3'
miRNA:   3'- gucCGGCUGa------------CGUCCAAGCCugUUau -5'
13235 3' -54.6 NC_003401.1 + 127568 0.67 0.852276
Target:  5'- -uGGCCGAUgacagagGCGGGUUCauGGGCGc-- -3'
miRNA:   3'- guCCGGCUGa------CGUCCAAG--CCUGUuau -5'
13235 3' -54.6 NC_003401.1 + 117096 0.68 0.83566
Target:  5'- aGGGauacaGGCUGUAGGUUCGG-UAAUGg -3'
miRNA:   3'- gUCCgg---CUGACGUCCAAGCCuGUUAU- -5'
13235 3' -54.6 NC_003401.1 + 117165 0.68 0.83566
Target:  5'- aGGGauacaGGCUGUAGGUUCGG-UAAUGg -3'
miRNA:   3'- gUCCgg---CUGACGUCCAAGCCuGUUAU- -5'
13235 3' -54.6 NC_003401.1 + 14902 0.68 0.818258
Target:  5'- aGGGUCGAgaGCAuGGaacCGGACGAUAg -3'
miRNA:   3'- gUCCGGCUgaCGU-CCaa-GCCUGUUAU- -5'
13235 3' -54.6 NC_003401.1 + 27713 0.73 0.544418
Target:  5'- --cGCCGGCUGCGGGggCGGugGu-- -3'
miRNA:   3'- gucCGGCUGACGUCCaaGCCugUuau -5'
13235 3' -54.6 NC_003401.1 + 76521 0.73 0.538267
Target:  5'- aCAGGCCGACUuaaaaaaauacacggGguGGUUCGGuuuUAGUGg -3'
miRNA:   3'- -GUCCGGCUGA---------------CguCCAAGCCu--GUUAU- -5'
13235 3' -54.6 NC_003401.1 + 99936 1.06 0.00437
Target:  5'- cCAGGCCGACUGCAGGUUCGGACAAUAc -3'
miRNA:   3'- -GUCCGGCUGACGUCCAAGCCUGUUAU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.