Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13235 | 3' | -54.6 | NC_003401.1 | + | 99936 | 1.06 | 0.00437 |
Target: 5'- cCAGGCCGACUGCAGGUUCGGACAAUAc -3' miRNA: 3'- -GUCCGGCUGACGUCCAAGCCUGUUAU- -5' |
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13235 | 3' | -54.6 | NC_003401.1 | + | 27713 | 0.73 | 0.544418 |
Target: 5'- --cGCCGGCUGCGGGggCGGugGu-- -3' miRNA: 3'- gucCGGCUGACGUCCaaGCCugUuau -5' |
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13235 | 3' | -54.6 | NC_003401.1 | + | 117096 | 0.68 | 0.83566 |
Target: 5'- aGGGauacaGGCUGUAGGUUCGG-UAAUGg -3' miRNA: 3'- gUCCgg---CUGACGUCCAAGCCuGUUAU- -5' |
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13235 | 3' | -54.6 | NC_003401.1 | + | 117165 | 0.68 | 0.83566 |
Target: 5'- aGGGauacaGGCUGUAGGUUCGG-UAAUGg -3' miRNA: 3'- gUCCgg---CUGACGUCCAAGCCuGUUAU- -5' |
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13235 | 3' | -54.6 | NC_003401.1 | + | 127568 | 0.67 | 0.852276 |
Target: 5'- -uGGCCGAUgacagagGCGGGUUCauGGGCGc-- -3' miRNA: 3'- guCCGGCUGa------CGUCCAAG--CCUGUuau -5' |
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13235 | 3' | -54.6 | NC_003401.1 | + | 27534 | 0.66 | 0.918247 |
Target: 5'- gGGGCCGGCUGUgcgcuggccuccaccGGGgcccgcgCGGACu--- -3' miRNA: 3'- gUCCGGCUGACG---------------UCCaa-----GCCUGuuau -5' |
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13235 | 3' | -54.6 | NC_003401.1 | + | 13703 | 0.66 | 0.915879 |
Target: 5'- -cGGCCGACaucgccCAGGUccgcgacuaucUCGGACAGg- -3' miRNA: 3'- guCCGGCUGac----GUCCA-----------AGCCUGUUau -5' |
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13235 | 3' | -54.6 | NC_003401.1 | + | 133714 | 0.67 | 0.882913 |
Target: 5'- uGGGCCGGgUGCccggcGGUcCGGGCGGg- -3' miRNA: 3'- gUCCGGCUgACGu----CCAaGCCUGUUau -5' |
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13235 | 3' | -54.6 | NC_003401.1 | + | 106879 | 0.67 | 0.872602 |
Target: 5'- --cGCCGGCguuugcggguuugGCGGGUUCGGugAGc- -3' miRNA: 3'- gucCGGCUGa------------CGUCCAAGCCugUUau -5' |
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13235 | 3' | -54.6 | NC_003401.1 | + | 14902 | 0.68 | 0.818258 |
Target: 5'- aGGGUCGAgaGCAuGGaacCGGACGAUAg -3' miRNA: 3'- gUCCGGCUgaCGU-CCaa-GCCUGUUAU- -5' |
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13235 | 3' | -54.6 | NC_003401.1 | + | 76521 | 0.73 | 0.538267 |
Target: 5'- aCAGGCCGACUuaaaaaaauacacggGguGGUUCGGuuuUAGUGg -3' miRNA: 3'- -GUCCGGCUGA---------------CguCCAAGCCu--GUUAU- -5' |
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13235 | 3' | -54.6 | NC_003401.1 | + | 122295 | 0.66 | 0.921723 |
Target: 5'- uCAGGU-GGCUGCGGGUcguggaaaGGGCAAUc -3' miRNA: 3'- -GUCCGgCUGACGUCCAag------CCUGUUAu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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