miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13236 3' -50.5 NC_003401.1 + 31099 0.66 0.99367
Target:  5'- aCCGUGaAUC-CCGGGUcu-CCGGGGGc -3'
miRNA:   3'- aGGUAU-UGGuGGUCCAauuGGCUCCU- -5'
13236 3' -50.5 NC_003401.1 + 42460 0.66 0.99268
Target:  5'- gUCCAUGuuuuuagggcaGCCAUC-GGUUAugCGucGGGAa -3'
miRNA:   3'- -AGGUAU-----------UGGUGGuCCAAUugGC--UCCU- -5'
13236 3' -50.5 NC_003401.1 + 115067 0.66 0.99268
Target:  5'- aCCugcaccCCACCGGGggAccugcaccccACCGGGGGa -3'
miRNA:   3'- aGGuauu--GGUGGUCCaaU----------UGGCUCCU- -5'
13236 3' -50.5 NC_003401.1 + 99991 0.66 0.99157
Target:  5'- aUCUAguGCCuCCGuGUUAACCGGGGu -3'
miRNA:   3'- -AGGUauUGGuGGUcCAAUUGGCUCCu -5'
13236 3' -50.5 NC_003401.1 + 118082 0.66 0.99157
Target:  5'- cCCAgauuugGGCCGCgGGGUcaGACUGGGGu -3'
miRNA:   3'- aGGUa-----UUGGUGgUCCAa-UUGGCUCCu -5'
13236 3' -50.5 NC_003401.1 + 8838 0.66 0.990332
Target:  5'- gCCAgguaAGCCACCGGuGUggcgauuGCCGcGGAg -3'
miRNA:   3'- aGGUa---UUGGUGGUC-CAau-----UGGCuCCU- -5'
13236 3' -50.5 NC_003401.1 + 118526 0.66 0.990332
Target:  5'- gUCCcUGGCCcCCuGGcccACCGGGGAu -3'
miRNA:   3'- -AGGuAUUGGuGGuCCaauUGGCUCCU- -5'
13236 3' -50.5 NC_003401.1 + 123426 0.66 0.988955
Target:  5'- cCCAcAACCA--GGGUUGuuccguuggGCCGGGGAa -3'
miRNA:   3'- aGGUaUUGGUggUCCAAU---------UGGCUCCU- -5'
13236 3' -50.5 NC_003401.1 + 86259 0.66 0.988955
Target:  5'- aUCAUGGCCGCUGGGg-AAUCGAGa- -3'
miRNA:   3'- aGGUAUUGGUGGUCCaaUUGGCUCcu -5'
13236 3' -50.5 NC_003401.1 + 132492 0.67 0.982706
Target:  5'- gCCcgGGCCGgCGGGgcggagggccgggAGCCGGGGGa -3'
miRNA:   3'- aGGuaUUGGUgGUCCaa-----------UUGGCUCCU- -5'
13236 3' -50.5 NC_003401.1 + 132654 0.67 0.981874
Target:  5'- -gCGgcGCCGCCGGGcucggccgGACCGGGGc -3'
miRNA:   3'- agGUauUGGUGGUCCaa------UUGGCUCCu -5'
13236 3' -50.5 NC_003401.1 + 106219 0.67 0.979663
Target:  5'- gUCUAUGACCACCAGa--AGCgGcGGAg -3'
miRNA:   3'- -AGGUAUUGGUGGUCcaaUUGgCuCCU- -5'
13236 3' -50.5 NC_003401.1 + 129460 0.67 0.979663
Target:  5'- cCCAccACC-CCAGGaacgcCCGAGGAa -3'
miRNA:   3'- aGGUauUGGuGGUCCaauu-GGCUCCU- -5'
13236 3' -50.5 NC_003401.1 + 14504 0.67 0.979663
Target:  5'- aCCGUGcucaaGCUcCUGGGgcgAACCGAGGAc -3'
miRNA:   3'- aGGUAU-----UGGuGGUCCaa-UUGGCUCCU- -5'
13236 3' -50.5 NC_003401.1 + 17935 0.67 0.979663
Target:  5'- ----aGGCCACCGaGUUGGCCGuGGGa -3'
miRNA:   3'- agguaUUGGUGGUcCAAUUGGCuCCU- -5'
13236 3' -50.5 NC_003401.1 + 115407 0.67 0.979663
Target:  5'- gCCGcucCCACCGGGggAccugcaccccACCGGGGGa -3'
miRNA:   3'- aGGUauuGGUGGUCCaaU----------UGGCUCCU- -5'
13236 3' -50.5 NC_003401.1 + 127026 0.68 0.977258
Target:  5'- cCCAgccGAUCACCAGGcagGACgCGAcGGAa -3'
miRNA:   3'- aGGUa--UUGGUGGUCCaa-UUG-GCU-CCU- -5'
13236 3' -50.5 NC_003401.1 + 125757 0.68 0.977258
Target:  5'- cUCCGgucUGACCAUC-GGUgGACCGuGGGc -3'
miRNA:   3'- -AGGU---AUUGGUGGuCCAaUUGGCuCCU- -5'
13236 3' -50.5 NC_003401.1 + 18571 0.68 0.97183
Target:  5'- gCCGaGACCACCccuGGgaAACCGAccgGGAu -3'
miRNA:   3'- aGGUaUUGGUGGu--CCaaUUGGCU---CCU- -5'
13236 3' -50.5 NC_003401.1 + 90945 0.69 0.963456
Target:  5'- aCUAUAaagGCCACCAGGggcagcaaaaacACCGGGGc -3'
miRNA:   3'- aGGUAU---UGGUGGUCCaau---------UGGCUCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.