miRNA display CGI


Results 1 - 20 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13236 5' -51.6 NC_003401.1 + 105071 0.66 0.985569
Target:  5'- uGCCCUgGuuGCGAUUuccagACC-GGGGGCCg -3'
miRNA:   3'- uCGGGAgU--UGUUAA-----UGGaCCUCUGGg -5'
13236 5' -51.6 NC_003401.1 + 57736 0.66 0.983712
Target:  5'- gGGCCg-CGGCGAgcggguaUACCUGGGcGGCCa -3'
miRNA:   3'- -UCGGgaGUUGUUa------AUGGACCU-CUGGg -5'
13236 5' -51.6 NC_003401.1 + 116850 0.66 0.97946
Target:  5'- aGGCUgcCGACcuaggUACCUGGGGaACCCc -3'
miRNA:   3'- -UCGGgaGUUGuua--AUGGACCUC-UGGG- -5'
13236 5' -51.6 NC_003401.1 + 17204 0.66 0.97946
Target:  5'- gAGCUCgagCGGCGAggagcgACCaacGGAGACCg -3'
miRNA:   3'- -UCGGGa--GUUGUUaa----UGGa--CCUCUGGg -5'
13236 5' -51.6 NC_003401.1 + 16747 0.66 0.97946
Target:  5'- aGGUCCUCAACGcgagcUAUCUGGAccUCCg -3'
miRNA:   3'- -UCGGGAGUUGUua---AUGGACCUcuGGG- -5'
13236 5' -51.6 NC_003401.1 + 119596 0.66 0.977048
Target:  5'- -cCCCUCc-CGGUgUugCUGGAGGCCg -3'
miRNA:   3'- ucGGGAGuuGUUA-AugGACCUCUGGg -5'
13236 5' -51.6 NC_003401.1 + 109965 0.66 0.977048
Target:  5'- cGCCUUUAGCGuaUACg-GGAGcCCCg -3'
miRNA:   3'- uCGGGAGUUGUuaAUGgaCCUCuGGG- -5'
13236 5' -51.6 NC_003401.1 + 93846 0.66 0.976796
Target:  5'- uGGCCUgUCAAUAGUaACCgccgccaUGGAGuCCCc -3'
miRNA:   3'- -UCGGG-AGUUGUUAaUGG-------ACCUCuGGG- -5'
13236 5' -51.6 NC_003401.1 + 66531 0.67 0.974434
Target:  5'- cGgCCUUAGC----GCC-GGGGACCCg -3'
miRNA:   3'- uCgGGAGUUGuuaaUGGaCCUCUGGG- -5'
13236 5' -51.6 NC_003401.1 + 50564 0.67 0.965303
Target:  5'- uGGUCCUUGGCGuUUGCCauuuGGACCCg -3'
miRNA:   3'- -UCGGGAGUUGUuAAUGGacc-UCUGGG- -5'
13236 5' -51.6 NC_003401.1 + 8831 0.67 0.961805
Target:  5'- aAGCCaccggugUGGCGAUUGCCgcGGAG-CCCa -3'
miRNA:   3'- -UCGGga-----GUUGUUAAUGGa-CCUCuGGG- -5'
13236 5' -51.6 NC_003401.1 + 103961 0.67 0.961442
Target:  5'- aAGUCCUCGACGguuagggcgucaGUUGCCguuauuagcuucuUGGGGGCUUc -3'
miRNA:   3'- -UCGGGAGUUGU------------UAAUGG-------------ACCUCUGGG- -5'
13236 5' -51.6 NC_003401.1 + 128457 0.68 0.95807
Target:  5'- cAGCUCcCGgugacauuGCAAUccaccGCCUGGAGACCg -3'
miRNA:   3'- -UCGGGaGU--------UGUUAa----UGGACCUCUGGg -5'
13236 5' -51.6 NC_003401.1 + 31276 0.68 0.95807
Target:  5'- cGCgUUCGuugucACAAUaGCCcccGGAGACCCg -3'
miRNA:   3'- uCGgGAGU-----UGUUAaUGGa--CCUCUGGG- -5'
13236 5' -51.6 NC_003401.1 + 39266 0.68 0.955713
Target:  5'- gGGCCCUgCAACAGcauaauggaggcgGCuCUGGAgguacGACCCu -3'
miRNA:   3'- -UCGGGA-GUUGUUaa-----------UG-GACCU-----CUGGG- -5'
13236 5' -51.6 NC_003401.1 + 21188 0.68 0.954092
Target:  5'- aGGUCCgcCGACAuggGCCUcGGGGuCCCg -3'
miRNA:   3'- -UCGGGa-GUUGUuaaUGGA-CCUCuGGG- -5'
13236 5' -51.6 NC_003401.1 + 87149 0.68 0.951587
Target:  5'- cGGCCuugCUCGGCGGUgucagcucccucaaaUACCUGuGAGAUCUc -3'
miRNA:   3'- -UCGG---GAGUUGUUA---------------AUGGAC-CUCUGGG- -5'
13236 5' -51.6 NC_003401.1 + 21515 0.68 0.949867
Target:  5'- aAGCCCg-AACAcggACCUGGuG-CCCa -3'
miRNA:   3'- -UCGGGagUUGUuaaUGGACCuCuGGG- -5'
13236 5' -51.6 NC_003401.1 + 56020 0.68 0.945391
Target:  5'- uGGCCUUgAAUAug-GCCaGGAuGGCCCa -3'
miRNA:   3'- -UCGGGAgUUGUuaaUGGaCCU-CUGGG- -5'
13236 5' -51.6 NC_003401.1 + 125731 0.68 0.945391
Target:  5'- gGGCaUCgaaGACAGcUACgUGGGGGCCCg -3'
miRNA:   3'- -UCG-GGag-UUGUUaAUGgACCUCUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.