miRNA display CGI


Results 21 - 33 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13236 5' -51.6 NC_003401.1 + 85061 0.68 0.94066
Target:  5'- -aCCCagaguUUAACAAagGCCgcggGGGGACCCg -3'
miRNA:   3'- ucGGG-----AGUUGUUaaUGGa---CCUCUGGG- -5'
13236 5' -51.6 NC_003401.1 + 126049 0.68 0.94066
Target:  5'- cGUUCUCGgacgaACAGUggUACUcaUGGGGGCCCa -3'
miRNA:   3'- uCGGGAGU-----UGUUA--AUGG--ACCUCUGGG- -5'
13236 5' -51.6 NC_003401.1 + 29157 0.69 0.92492
Target:  5'- gAGCCCUCAAU-----CgUGGcGACCCu -3'
miRNA:   3'- -UCGGGAGUUGuuaauGgACCuCUGGG- -5'
13236 5' -51.6 NC_003401.1 + 66841 0.69 0.919155
Target:  5'- gGGCCUgUCAGCAA--GCCUGcAGGCCa -3'
miRNA:   3'- -UCGGG-AGUUGUUaaUGGACcUCUGGg -5'
13236 5' -51.6 NC_003401.1 + 126406 0.69 0.906849
Target:  5'- uGGCCUUCAggucaggugugACGcGUUGCCUGGAcGACUUc -3'
miRNA:   3'- -UCGGGAGU-----------UGU-UAAUGGACCU-CUGGG- -5'
13236 5' -51.6 NC_003401.1 + 7532 0.7 0.900312
Target:  5'- gGGaCCUUUAACG---ACCUGGAGAUUCu -3'
miRNA:   3'- -UC-GGGAGUUGUuaaUGGACCUCUGGG- -5'
13236 5' -51.6 NC_003401.1 + 75925 0.7 0.900312
Target:  5'- cGGCCCUagauCAGUauuCC-GGAGGCCCc -3'
miRNA:   3'- -UCGGGAguu-GUUAau-GGaCCUCUGGG- -5'
13236 5' -51.6 NC_003401.1 + 19155 0.7 0.871684
Target:  5'- cGGCuCUUCAGaGGUUaGCCUGGAG-CCCu -3'
miRNA:   3'- -UCG-GGAGUUgUUAA-UGGACCUCuGGG- -5'
13236 5' -51.6 NC_003401.1 + 102309 0.73 0.775217
Target:  5'- aGGCUCUCGAcCAAaUACUgGGAGACgCCg -3'
miRNA:   3'- -UCGGGAGUU-GUUaAUGGaCCUCUG-GG- -5'
13236 5' -51.6 NC_003401.1 + 993 0.74 0.714729
Target:  5'- cAGCCCUauGCuuugUGCCUGGgggagAGGCCCg -3'
miRNA:   3'- -UCGGGAguUGuua-AUGGACC-----UCUGGG- -5'
13236 5' -51.6 NC_003401.1 + 109280 0.74 0.714729
Target:  5'- cGCCCUgAACGAgauugcUACCggcUGGAGGCCg -3'
miRNA:   3'- uCGGGAgUUGUUa-----AUGG---ACCUCUGGg -5'
13236 5' -51.6 NC_003401.1 + 113322 0.81 0.365374
Target:  5'- aGGCCCgggCGAUuuaggUGCCUGGuGACCCg -3'
miRNA:   3'- -UCGGGa--GUUGuua--AUGGACCuCUGGG- -5'
13236 5' -51.6 NC_003401.1 + 101997 1.12 0.004263
Target:  5'- aAGCCCUCAACAAUUACCUGGAGACCCc -3'
miRNA:   3'- -UCGGGAGUUGUUAAUGGACCUCUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.