miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13237 3' -53.8 NC_003401.1 + 15146 0.66 0.964806
Target:  5'- aCUCGAUaUCAAaGGCCACGAuGCGguacggggGCCa -3'
miRNA:   3'- -GGGUUA-AGUUgCCGGUGCU-CGC--------UGGc -5'
13237 3' -53.8 NC_003401.1 + 105804 0.66 0.957747
Target:  5'- aCCGAUcagaauauuuUUGGCGGCCACGcccaAGCG-CCu -3'
miRNA:   3'- gGGUUA----------AGUUGCCGGUGC----UCGCuGGc -5'
13237 3' -53.8 NC_003401.1 + 125658 0.66 0.957747
Target:  5'- gUCGGUggaGACGGCCGCGAcGuCGAacCCGa -3'
miRNA:   3'- gGGUUAag-UUGCCGGUGCU-C-GCU--GGC- -5'
13237 3' -53.8 NC_003401.1 + 92676 0.66 0.957747
Target:  5'- -aCAGaUCAGCGGCCA-GGGCagGGCCc -3'
miRNA:   3'- ggGUUaAGUUGCCGGUgCUCG--CUGGc -5'
13237 3' -53.8 NC_003401.1 + 70043 0.66 0.95661
Target:  5'- uCCgAGUugcuggagggggaaUCGAUGGCCGgGGGgGACUGu -3'
miRNA:   3'- -GGgUUA--------------AGUUGCCGGUgCUCgCUGGC- -5'
13237 3' -53.8 NC_003401.1 + 128358 0.66 0.953877
Target:  5'- gCCAAgugUCAggGCGGCCAa-GGUGcCCGg -3'
miRNA:   3'- gGGUUa--AGU--UGCCGGUgcUCGCuGGC- -5'
13237 3' -53.8 NC_003401.1 + 16308 0.66 0.949775
Target:  5'- -aCGcgUCu-CGGUCGCGAgGUGACCGc -3'
miRNA:   3'- ggGUuaAGuuGCCGGUGCU-CGCUGGC- -5'
13237 3' -53.8 NC_003401.1 + 49505 0.66 0.949775
Target:  5'- gUgGGUUCAACGGCC-CGGGU-AUCGg -3'
miRNA:   3'- gGgUUAAGUUGCCGGuGCUCGcUGGC- -5'
13237 3' -53.8 NC_003401.1 + 123523 0.66 0.949775
Target:  5'- gUCCAGgggccgCGccGCGGCCAaaccgccuauaUGAGUGACCa -3'
miRNA:   3'- -GGGUUaa----GU--UGCCGGU-----------GCUCGCUGGc -5'
13237 3' -53.8 NC_003401.1 + 132547 0.66 0.949352
Target:  5'- cCCCAcaagCcGCGGCgCGCGgcucccgaugccgGGCGGCCGc -3'
miRNA:   3'- -GGGUuaa-GuUGCCG-GUGC-------------UCGCUGGC- -5'
13237 3' -53.8 NC_003401.1 + 18128 0.67 0.945437
Target:  5'- uUCCAAcagggAGCGGCCGCucgGGGCGAUCu -3'
miRNA:   3'- -GGGUUaag--UUGCCGGUG---CUCGCUGGc -5'
13237 3' -53.8 NC_003401.1 + 132406 0.67 0.94086
Target:  5'- uUCGGUUC-GCGGggccgggggucCCGCGGGgGGCCGg -3'
miRNA:   3'- gGGUUAAGuUGCC-----------GGUGCUCgCUGGC- -5'
13237 3' -53.8 NC_003401.1 + 110754 0.67 0.94086
Target:  5'- cCCCGAUcaUgGACGGCUACccucaGGUGGCUGc -3'
miRNA:   3'- -GGGUUA--AgUUGCCGGUGc----UCGCUGGC- -5'
13237 3' -53.8 NC_003401.1 + 48602 0.67 0.936043
Target:  5'- aCCAAUcuagcggCAACGGCCGCGGaucuugccGCuGCCa -3'
miRNA:   3'- gGGUUAa------GUUGCCGGUGCU--------CGcUGGc -5'
13237 3' -53.8 NC_003401.1 + 20106 0.67 0.925678
Target:  5'- gCgGAgcCAAUGGCCGCG-GCGuCCGc -3'
miRNA:   3'- gGgUUaaGUUGCCGGUGCuCGCuGGC- -5'
13237 3' -53.8 NC_003401.1 + 20763 0.68 0.920131
Target:  5'- uUCCAGggC-GCGGCCccGCGuuggggguuGGCGGCCGg -3'
miRNA:   3'- -GGGUUaaGuUGCCGG--UGC---------UCGCUGGC- -5'
13237 3' -53.8 NC_003401.1 + 19471 0.68 0.91434
Target:  5'- uCCgGAUUCA--GGaCUGCGAGUGGCCa -3'
miRNA:   3'- -GGgUUAAGUugCC-GGUGCUCGCUGGc -5'
13237 3' -53.8 NC_003401.1 + 14950 0.68 0.91434
Target:  5'- cCUCAgcGUUCaAGCGGaC-CGAGCGACUGg -3'
miRNA:   3'- -GGGU--UAAG-UUGCCgGuGCUCGCUGGC- -5'
13237 3' -53.8 NC_003401.1 + 17206 0.68 0.91434
Target:  5'- gCUCGA----GCGGCgAgGAGCGACCa -3'
miRNA:   3'- -GGGUUaaguUGCCGgUgCUCGCUGGc -5'
13237 3' -53.8 NC_003401.1 + 51770 0.68 0.91434
Target:  5'- cCCCGAgacgagCGAUGGCUGCGcGCaACCGc -3'
miRNA:   3'- -GGGUUaa----GUUGCCGGUGCuCGcUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.