miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13237 3' -53.8 NC_003401.1 + 17206 0.68 0.91434
Target:  5'- gCUCGA----GCGGCgAgGAGCGACCa -3'
miRNA:   3'- -GGGUUaaguUGCCGgUgCUCGCUGGc -5'
13237 3' -53.8 NC_003401.1 + 7180 0.68 0.902035
Target:  5'- gCCAcgUgAACGGCCuguuCGGcCGACCa -3'
miRNA:   3'- gGGUuaAgUUGCCGGu---GCUcGCUGGc -5'
13237 3' -53.8 NC_003401.1 + 42387 0.68 0.895525
Target:  5'- gCCAcuccUCGuacuCGGCCAUGAG-GGCCGg -3'
miRNA:   3'- gGGUua--AGUu---GCCGGUGCUCgCUGGC- -5'
13237 3' -53.8 NC_003401.1 + 119095 0.68 0.888781
Target:  5'- aCCGGgugcgUUGGCGGCCACGAccuUGGCCa -3'
miRNA:   3'- gGGUUa----AGUUGCCGGUGCUc--GCUGGc -5'
13237 3' -53.8 NC_003401.1 + 118194 0.69 0.881806
Target:  5'- cCCCGg--CGGCGGCacCGCGGGCG-CUGg -3'
miRNA:   3'- -GGGUuaaGUUGCCG--GUGCUCGCuGGC- -5'
13237 3' -53.8 NC_003401.1 + 107712 0.69 0.857214
Target:  5'- aCCCGAgggUgGA-GGCCACcggggcaacgcucgGGGCGGCCGa -3'
miRNA:   3'- -GGGUUa--AgUUgCCGGUG--------------CUCGCUGGC- -5'
13237 3' -53.8 NC_003401.1 + 29001 0.69 0.8517
Target:  5'- gCCCuggcgUC-ACGGCUcgcgggggacucGCGAGCGGCCc -3'
miRNA:   3'- -GGGuua--AGuUGCCGG------------UGCUCGCUGGc -5'
13237 3' -53.8 NC_003401.1 + 19640 0.7 0.835406
Target:  5'- uCCCGGUUCggUGGCCACucGCaGuCCu -3'
miRNA:   3'- -GGGUUAAGuuGCCGGUGcuCG-CuGGc -5'
13237 3' -53.8 NC_003401.1 + 132404 0.7 0.826972
Target:  5'- cCCCGGgcgCAagaugGCGGCCGCGgcccGGCGGCgGc -3'
miRNA:   3'- -GGGUUaa-GU-----UGCCGGUGC----UCGCUGgC- -5'
13237 3' -53.8 NC_003401.1 + 57723 0.7 0.818358
Target:  5'- aCCAuuuUUaCGugGGCCGCG-GCGAgCGg -3'
miRNA:   3'- gGGUu--AA-GUugCCGGUGCuCGCUgGC- -5'
13237 3' -53.8 NC_003401.1 + 85061 0.7 0.809572
Target:  5'- aCCCAgaGUUUAACaaaGGCCGCGGGgGgACCc -3'
miRNA:   3'- -GGGU--UAAGUUG---CCGGUGCUCgC-UGGc -5'
13237 3' -53.8 NC_003401.1 + 117602 0.71 0.782263
Target:  5'- -------aGACGGCCGCG-GCGACCa -3'
miRNA:   3'- ggguuaagUUGCCGGUGCuCGCUGGc -5'
13237 3' -53.8 NC_003401.1 + 12960 0.71 0.782263
Target:  5'- cCCCAccagCGuaauACGGCgauaUACGGGCGGCCGg -3'
miRNA:   3'- -GGGUuaa-GU----UGCCG----GUGCUCGCUGGC- -5'
13237 3' -53.8 NC_003401.1 + 108638 0.71 0.782263
Target:  5'- uCCCAgg-UggUGGCCAgGAGCGuACUGg -3'
miRNA:   3'- -GGGUuaaGuuGCCGGUgCUCGC-UGGC- -5'
13237 3' -53.8 NC_003401.1 + 17325 0.73 0.693942
Target:  5'- aCCCGccugcaaacGUUCAAgGGCCACGGG-GGCUa -3'
miRNA:   3'- -GGGU---------UAAGUUgCCGGUGCUCgCUGGc -5'
13237 3' -53.8 NC_003401.1 + 93814 0.73 0.642587
Target:  5'- cCCCAGaUCGguuuCGuaCGCGAGCGACCa -3'
miRNA:   3'- -GGGUUaAGUu---GCcgGUGCUCGCUGGc -5'
13237 3' -53.8 NC_003401.1 + 23626 0.73 0.642587
Target:  5'- gCCAAaaacACGggcGCCGCGAGCGGCCGg -3'
miRNA:   3'- gGGUUaaguUGC---CGGUGCUCGCUGGC- -5'
13237 3' -53.8 NC_003401.1 + 81796 0.75 0.550252
Target:  5'- gCCCGAUUCGaccGCGGCaACGAGCcaGGCCc -3'
miRNA:   3'- -GGGUUAAGU---UGCCGgUGCUCG--CUGGc -5'
13237 3' -53.8 NC_003401.1 + 117766 0.75 0.540188
Target:  5'- aCCCg---CGGCGGCCAUGGucgccGCGGCCGu -3'
miRNA:   3'- -GGGuuaaGUUGCCGGUGCU-----CGCUGGC- -5'
13237 3' -53.8 NC_003401.1 + 119739 0.81 0.298046
Target:  5'- aCCGAcucggCGGCGGCCGCGAgguuGCGGCCGa -3'
miRNA:   3'- gGGUUaa---GUUGCCGGUGCU----CGCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.