miRNA display CGI


Results 1 - 20 of 26 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13237 5' -56.7 NC_003401.1 + 118125 0.66 0.868606
Target:  5'- gGGCgGCaaaaGCCGc-CCCAUGGGCa--- -3'
miRNA:   3'- -CCGgUGg---CGGCaaGGGUACCUGaugu -5'
13237 5' -56.7 NC_003401.1 + 103187 0.66 0.868606
Target:  5'- cGCCACagGCCGUUUCUAcGG-CUACc -3'
miRNA:   3'- cCGGUGg-CGGCAAGGGUaCCuGAUGu -5'
13237 5' -56.7 NC_003401.1 + 119838 0.66 0.868606
Target:  5'- aGGCgGCCGCCa---CCAgGGACggggGCAg -3'
miRNA:   3'- -CCGgUGGCGGcaagGGUaCCUGa---UGU- -5'
13237 5' -56.7 NC_003401.1 + 64672 0.66 0.867117
Target:  5'- uGGCUACCGCCcacgcggcaaccgGUUCuCCcUGGccgcaguuucuagGCUGCAa -3'
miRNA:   3'- -CCGGUGGCGG-------------CAAG-GGuACC-------------UGAUGU- -5'
13237 5' -56.7 NC_003401.1 + 23787 0.66 0.861079
Target:  5'- cGGCCGCuCGCgGcgCCCGuguuuuUGGcCUGCu -3'
miRNA:   3'- -CCGGUG-GCGgCaaGGGU------ACCuGAUGu -5'
13237 5' -56.7 NC_003401.1 + 17801 0.66 0.853346
Target:  5'- cGCgCGCCGCCGUUCUCGccgaaGACgUACGu -3'
miRNA:   3'- cCG-GUGGCGGCAAGGGUac---CUG-AUGU- -5'
13237 5' -56.7 NC_003401.1 + 118103 0.67 0.837286
Target:  5'- gGGCCGCgCGCCa---CCAUGGGCccCAg -3'
miRNA:   3'- -CCGGUG-GCGGcaagGGUACCUGauGU- -5'
13237 5' -56.7 NC_003401.1 + 64469 0.67 0.837286
Target:  5'- cGGCCACUcccaggaugcuGCCGaUUCCCG-GGGCa--- -3'
miRNA:   3'- -CCGGUGG-----------CGGC-AAGGGUaCCUGaugu -5'
13237 5' -56.7 NC_003401.1 + 78092 0.67 0.811814
Target:  5'- cGCCACCGCUGcaaCCCGaGGugUucACGg -3'
miRNA:   3'- cCGGUGGCGGCaa-GGGUaCCugA--UGU- -5'
13237 5' -56.7 NC_003401.1 + 118340 0.67 0.811814
Target:  5'- uGCCGCCGCCGgggucgCCCGcgGGucACUGa- -3'
miRNA:   3'- cCGGUGGCGGCaa----GGGUa-CC--UGAUgu -5'
13237 5' -56.7 NC_003401.1 + 45887 0.67 0.802986
Target:  5'- uGUCGCCGCCGU---CAUGGcccACUACAu -3'
miRNA:   3'- cCGGUGGCGGCAaggGUACC---UGAUGU- -5'
13237 5' -56.7 NC_003401.1 + 37207 0.67 0.802986
Target:  5'- aGGCCGCUGCgGUUCCUGaa-ACUACc -3'
miRNA:   3'- -CCGGUGGCGgCAAGGGUaccUGAUGu -5'
13237 5' -56.7 NC_003401.1 + 8773 0.67 0.794004
Target:  5'- cGCCugCGucccgugauaaCCGUUCCCAUGGuaguCaACAa -3'
miRNA:   3'- cCGGugGC-----------GGCAAGGGUACCu---GaUGU- -5'
13237 5' -56.7 NC_003401.1 + 118032 0.68 0.784876
Target:  5'- uGGUCGCCGCgCGUaCCCAUcGGCcGCu -3'
miRNA:   3'- -CCGGUGGCG-GCAaGGGUAcCUGaUGu -5'
13237 5' -56.7 NC_003401.1 + 115424 0.68 0.747079
Target:  5'- aGCCACCccggagccgaGCCGcUCCCAccgggGGACcUGCAc -3'
miRNA:   3'- cCGGUGG----------CGGCaAGGGUa----CCUG-AUGU- -5'
13237 5' -56.7 NC_003401.1 + 19634 0.69 0.71764
Target:  5'- cGGCCACCGaucgCGcgCCC-UGGAgCUGCc -3'
miRNA:   3'- -CCGGUGGCg---GCaaGGGuACCU-GAUGu -5'
13237 5' -56.7 NC_003401.1 + 131135 0.69 0.706668
Target:  5'- aGGUCAauuaacuCCGuuGccuucaauuuuuUUCCCAUGGAUUACAg -3'
miRNA:   3'- -CCGGU-------GGCggC------------AAGGGUACCUGAUGU- -5'
13237 5' -56.7 NC_003401.1 + 56377 0.69 0.697633
Target:  5'- uGCCACUGaCCGccacaUUCCCG-GGACUugGa -3'
miRNA:   3'- cCGGUGGC-GGC-----AAGGGUaCCUGAugU- -5'
13237 5' -56.7 NC_003401.1 + 39740 0.69 0.696626
Target:  5'- gGGCCGCCuGCCGUcCCCAuacgcgaUGGucGgUACAg -3'
miRNA:   3'- -CCGGUGG-CGGCAaGGGU-------ACC--UgAUGU- -5'
13237 5' -56.7 NC_003401.1 + 57131 0.7 0.667233
Target:  5'- cGCCACCGCaacauuucaCGUUCUCuggGUGGACgagGCGu -3'
miRNA:   3'- cCGGUGGCG---------GCAAGGG---UACCUGa--UGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.