miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13237 5' -56.7 NC_003401.1 + 103142 1.1 0.001826
Target:  5'- aGGCCACCGCCGUUCCCAUGGACUACAc -3'
miRNA:   3'- -CCGGUGGCGGCAAGGGUACCUGAUGU- -5'
13237 5' -56.7 NC_003401.1 + 43316 0.76 0.317623
Target:  5'- uGGUCGCCGgCGUUCCCGUGaGGCggGCc -3'
miRNA:   3'- -CCGGUGGCgGCAAGGGUAC-CUGa-UGu -5'
13237 5' -56.7 NC_003401.1 + 18297 0.74 0.440189
Target:  5'- uGGCCGCCGCCGcgcccugcCCCGUGG--UGCGa -3'
miRNA:   3'- -CCGGUGGCGGCaa------GGGUACCugAUGU- -5'
13237 5' -56.7 NC_003401.1 + 40468 0.72 0.512661
Target:  5'- cGCCACCGCg--UCCCGaucaucgucgacgcUGGGCUGCGc -3'
miRNA:   3'- cCGGUGGCGgcaAGGGU--------------ACCUGAUGU- -5'
13237 5' -56.7 NC_003401.1 + 80501 0.71 0.585509
Target:  5'- cGGCUACCGCCGUgggCgCAgauGugUGCAg -3'
miRNA:   3'- -CCGGUGGCGGCAa--GgGUac-CugAUGU- -5'
13237 5' -56.7 NC_003401.1 + 14503 0.71 0.616105
Target:  5'- cGGUCGCgCGCCG-UCCaCAUGGACc--- -3'
miRNA:   3'- -CCGGUG-GCGGCaAGG-GUACCUGaugu -5'
13237 5' -56.7 NC_003401.1 + 57131 0.7 0.667233
Target:  5'- cGCCACCGCaacauuucaCGUUCUCuggGUGGACgagGCGu -3'
miRNA:   3'- cCGGUGGCG---------GCAAGGG---UACCUGa--UGU- -5'
13237 5' -56.7 NC_003401.1 + 39740 0.69 0.696626
Target:  5'- gGGCCGCCuGCCGUcCCCAuacgcgaUGGucGgUACAg -3'
miRNA:   3'- -CCGGUGG-CGGCAaGGGU-------ACC--UgAUGU- -5'
13237 5' -56.7 NC_003401.1 + 56377 0.69 0.697633
Target:  5'- uGCCACUGaCCGccacaUUCCCG-GGACUugGa -3'
miRNA:   3'- cCGGUGGC-GGC-----AAGGGUaCCUGAugU- -5'
13237 5' -56.7 NC_003401.1 + 131135 0.69 0.706668
Target:  5'- aGGUCAauuaacuCCGuuGccuucaauuuuuUUCCCAUGGAUUACAg -3'
miRNA:   3'- -CCGGU-------GGCggC------------AAGGGUACCUGAUGU- -5'
13237 5' -56.7 NC_003401.1 + 19634 0.69 0.71764
Target:  5'- cGGCCACCGaucgCGcgCCC-UGGAgCUGCc -3'
miRNA:   3'- -CCGGUGGCg---GCaaGGGuACCU-GAUGu -5'
13237 5' -56.7 NC_003401.1 + 115424 0.68 0.747079
Target:  5'- aGCCACCccggagccgaGCCGcUCCCAccgggGGACcUGCAc -3'
miRNA:   3'- cCGGUGG----------CGGCaAGGGUa----CCUG-AUGU- -5'
13237 5' -56.7 NC_003401.1 + 118032 0.68 0.784876
Target:  5'- uGGUCGCCGCgCGUaCCCAUcGGCcGCu -3'
miRNA:   3'- -CCGGUGGCG-GCAaGGGUAcCUGaUGu -5'
13237 5' -56.7 NC_003401.1 + 8773 0.67 0.794004
Target:  5'- cGCCugCGucccgugauaaCCGUUCCCAUGGuaguCaACAa -3'
miRNA:   3'- cCGGugGC-----------GGCAAGGGUACCu---GaUGU- -5'
13237 5' -56.7 NC_003401.1 + 37207 0.67 0.802986
Target:  5'- aGGCCGCUGCgGUUCCUGaa-ACUACc -3'
miRNA:   3'- -CCGGUGGCGgCAAGGGUaccUGAUGu -5'
13237 5' -56.7 NC_003401.1 + 45887 0.67 0.802986
Target:  5'- uGUCGCCGCCGU---CAUGGcccACUACAu -3'
miRNA:   3'- cCGGUGGCGGCAaggGUACC---UGAUGU- -5'
13237 5' -56.7 NC_003401.1 + 78092 0.67 0.811814
Target:  5'- cGCCACCGCUGcaaCCCGaGGugUucACGg -3'
miRNA:   3'- cCGGUGGCGGCaa-GGGUaCCugA--UGU- -5'
13237 5' -56.7 NC_003401.1 + 118340 0.67 0.811814
Target:  5'- uGCCGCCGCCGgggucgCCCGcgGGucACUGa- -3'
miRNA:   3'- cCGGUGGCGGCaa----GGGUa-CC--UGAUgu -5'
13237 5' -56.7 NC_003401.1 + 64469 0.67 0.837286
Target:  5'- cGGCCACUcccaggaugcuGCCGaUUCCCG-GGGCa--- -3'
miRNA:   3'- -CCGGUGG-----------CGGC-AAGGGUaCCUGaugu -5'
13237 5' -56.7 NC_003401.1 + 118103 0.67 0.837286
Target:  5'- gGGCCGCgCGCCa---CCAUGGGCccCAg -3'
miRNA:   3'- -CCGGUG-GCGGcaagGGUACCUGauGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.