Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 13237 | 5' | -56.7 | NC_003401.1 | + | 14503 | 0.71 | 0.616105 |
|
Target: 5'- cGGUCGCgCGCCG-UCCaCAUGGACc--- -3' miRNA: 3'- -CCGGUG-GCGGCaAGG-GUACCUGaugu -5' |
|||||||
| 13237 | 5' | -56.7 | NC_003401.1 | + | 80501 | 0.71 | 0.585509 |
|
Target: 5'- cGGCUACCGCCGUgggCgCAgauGugUGCAg -3' miRNA: 3'- -CCGGUGGCGGCAa--GgGUac-CugAUGU- -5' |
|||||||
| 13237 | 5' | -56.7 | NC_003401.1 | + | 40468 | 0.72 | 0.512661 |
|
Target: 5'- cGCCACCGCg--UCCCGaucaucgucgacgcUGGGCUGCGc -3' miRNA: 3'- cCGGUGGCGgcaAGGGU--------------ACCUGAUGU- -5' |
|||||||
| 13237 | 5' | -56.7 | NC_003401.1 | + | 18297 | 0.74 | 0.440189 |
|
Target: 5'- uGGCCGCCGCCGcgcccugcCCCGUGG--UGCGa -3' miRNA: 3'- -CCGGUGGCGGCaa------GGGUACCugAUGU- -5' |
|||||||
| 13237 | 5' | -56.7 | NC_003401.1 | + | 43316 | 0.76 | 0.317623 |
|
Target: 5'- uGGUCGCCGgCGUUCCCGUGaGGCggGCc -3' miRNA: 3'- -CCGGUGGCgGCAAGGGUAC-CUGa-UGu -5' |
|||||||
| 13237 | 5' | -56.7 | NC_003401.1 | + | 103142 | 1.1 | 0.001826 |
|
Target: 5'- aGGCCACCGCCGUUCCCAUGGACUACAc -3' miRNA: 3'- -CCGGUGGCGGCAAGGGUACCUGAUGU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home