miRNA display CGI


Results 1 - 20 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13238 3' -58.4 NC_003401.1 + 69627 0.66 0.823133
Target:  5'- cGCCGcAACGGUccCCGCUAAgagaaagcagCCACgCGa -3'
miRNA:   3'- -CGGC-UUGCCGa-GGCGGUUa---------GGUGgGC- -5'
13238 3' -58.4 NC_003401.1 + 82473 0.66 0.823133
Target:  5'- uGCCGGAgGGgUCgGCCcaaaacgCCaACCCGc -3'
miRNA:   3'- -CGGCUUgCCgAGgCGGuua----GG-UGGGC- -5'
13238 3' -58.4 NC_003401.1 + 19771 0.66 0.814671
Target:  5'- gGCCGAggagcugccGCaGUUUCGCCGggCCACCg- -3'
miRNA:   3'- -CGGCU---------UGcCGAGGCGGUuaGGUGGgc -5'
13238 3' -58.4 NC_003401.1 + 91721 0.66 0.814671
Target:  5'- uGCCcgGGACGGCauuauuccggUCCGUCGgAUCUACCUu -3'
miRNA:   3'- -CGG--CUUGCCG----------AGGCGGU-UAGGUGGGc -5'
13238 3' -58.4 NC_003401.1 + 42345 0.66 0.813816
Target:  5'- cGCCGG--GGUucaUCUGCCAcgcaaagcacaagAUUCACCCGg -3'
miRNA:   3'- -CGGCUugCCG---AGGCGGU-------------UAGGUGGGC- -5'
13238 3' -58.4 NC_003401.1 + 8643 0.66 0.809516
Target:  5'- uGCCGAggaauacccccacguGCugGGCUCCGCggCAAUcgCCACaCCGg -3'
miRNA:   3'- -CGGCU---------------UG--CCGAGGCG--GUUA--GGUG-GGC- -5'
13238 3' -58.4 NC_003401.1 + 132835 0.66 0.797275
Target:  5'- cGCCG---GGCcCCGCCGAggCGCCCc -3'
miRNA:   3'- -CGGCuugCCGaGGCGGUUagGUGGGc -5'
13238 3' -58.4 NC_003401.1 + 12332 0.66 0.796389
Target:  5'- -aCGAguACGGUUCCGCCGaacgcgcgaucauGUCCACg-- -3'
miRNA:   3'- cgGCU--UGCCGAGGCGGU-------------UAGGUGggc -5'
13238 3' -58.4 NC_003401.1 + 48612 0.66 0.794614
Target:  5'- aCCGGaucggaccaaucuaGCGGCaacggCCGCgGAUCUugCCGc -3'
miRNA:   3'- cGGCU--------------UGCCGa----GGCGgUUAGGugGGC- -5'
13238 3' -58.4 NC_003401.1 + 94485 0.66 0.788356
Target:  5'- cGUgGGACGGCguuaaGCCGucCCACCCu -3'
miRNA:   3'- -CGgCUUGCCGagg--CGGUuaGGUGGGc -5'
13238 3' -58.4 NC_003401.1 + 63958 0.67 0.77012
Target:  5'- aGCUG-ACGGCUuuUCGCCAcgggCCucGCCCGc -3'
miRNA:   3'- -CGGCuUGCCGA--GGCGGUua--GG--UGGGC- -5'
13238 3' -58.4 NC_003401.1 + 117676 0.67 0.77012
Target:  5'- uGCCG-GCGGC-CC-CUAAUCCcCCUGg -3'
miRNA:   3'- -CGGCuUGCCGaGGcGGUUAGGuGGGC- -5'
13238 3' -58.4 NC_003401.1 + 81832 0.67 0.76082
Target:  5'- aUCGAuccACGGC-CCGCCAuUCCGCgUa -3'
miRNA:   3'- cGGCU---UGCCGaGGCGGUuAGGUGgGc -5'
13238 3' -58.4 NC_003401.1 + 119670 0.67 0.76082
Target:  5'- aCCGGcCGGCgUCCGaCGAUaCGCCCGa -3'
miRNA:   3'- cGGCUuGCCG-AGGCgGUUAgGUGGGC- -5'
13238 3' -58.4 NC_003401.1 + 104493 0.67 0.751409
Target:  5'- uGCCGGGaaGCcgcaaauuUCCucagacagGCCAGUCUACCCGa -3'
miRNA:   3'- -CGGCUUgcCG--------AGG--------CGGUUAGGUGGGC- -5'
13238 3' -58.4 NC_003401.1 + 17807 0.67 0.741897
Target:  5'- uCCGAGCGcGCgCCGCCGuUCuCGCCg- -3'
miRNA:   3'- cGGCUUGC-CGaGGCGGUuAG-GUGGgc -5'
13238 3' -58.4 NC_003401.1 + 14341 0.67 0.732292
Target:  5'- gGCUGAACGGCUCCGgCg--CCGgCa- -3'
miRNA:   3'- -CGGCUUGCCGAGGCgGuuaGGUgGgc -5'
13238 3' -58.4 NC_003401.1 + 119903 0.67 0.732292
Target:  5'- gGCCGcaacccucGCGGCcgCCGCCGAgucgguugCCACCa- -3'
miRNA:   3'- -CGGCu-------UGCCGa-GGCGGUUa-------GGUGGgc -5'
13238 3' -58.4 NC_003401.1 + 132380 0.67 0.732292
Target:  5'- gGCCcGGCGGCggCGCCGGccgggcgccUCCggGCCCGg -3'
miRNA:   3'- -CGGcUUGCCGagGCGGUU---------AGG--UGGGC- -5'
13238 3' -58.4 NC_003401.1 + 117726 0.67 0.722603
Target:  5'- cGCUGGcGCGGUgccaccgCCGCCGAaCC-CCCGc -3'
miRNA:   3'- -CGGCU-UGCCGa------GGCGGUUaGGuGGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.