Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13238 | 3' | -58.4 | NC_003401.1 | + | 8643 | 0.66 | 0.809516 |
Target: 5'- uGCCGAggaauacccccacguGCugGGCUCCGCggCAAUcgCCACaCCGg -3' miRNA: 3'- -CGGCU---------------UG--CCGAGGCG--GUUA--GGUG-GGC- -5' |
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13238 | 3' | -58.4 | NC_003401.1 | + | 12029 | 0.69 | 0.633052 |
Target: 5'- uGCCGGucACGGCggUC-UCGGUCCACCCu -3' miRNA: 3'- -CGGCU--UGCCGa-GGcGGUUAGGUGGGc -5' |
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13238 | 3' | -58.4 | NC_003401.1 | + | 12332 | 0.66 | 0.796389 |
Target: 5'- -aCGAguACGGUUCCGCCGaacgcgcgaucauGUCCACg-- -3' miRNA: 3'- cgGCU--UGCCGAGGCGGU-------------UAGGUGggc -5' |
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13238 | 3' | -58.4 | NC_003401.1 | + | 14341 | 0.67 | 0.732292 |
Target: 5'- gGCUGAACGGCUCCGgCg--CCGgCa- -3' miRNA: 3'- -CGGCUUGCCGAGGCgGuuaGGUgGgc -5' |
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13238 | 3' | -58.4 | NC_003401.1 | + | 17807 | 0.67 | 0.741897 |
Target: 5'- uCCGAGCGcGCgCCGCCGuUCuCGCCg- -3' miRNA: 3'- cGGCUUGC-CGaGGCGGUuAG-GUGGgc -5' |
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13238 | 3' | -58.4 | NC_003401.1 | + | 19771 | 0.66 | 0.814671 |
Target: 5'- gGCCGAggagcugccGCaGUUUCGCCGggCCACCg- -3' miRNA: 3'- -CGGCU---------UGcCGAGGCGGUuaGGUGGgc -5' |
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13238 | 3' | -58.4 | NC_003401.1 | + | 20259 | 0.72 | 0.48489 |
Target: 5'- cGCCGcggccauUGGCUCCGCgGugaccguggugcuGUCCGCCCu -3' miRNA: 3'- -CGGCuu-----GCCGAGGCGgU-------------UAGGUGGGc -5' |
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13238 | 3' | -58.4 | NC_003401.1 | + | 21171 | 0.68 | 0.673206 |
Target: 5'- cGCCGAucgUGGggCCGCCuguuaauuaGAUCCACCaCGu -3' miRNA: 3'- -CGGCUu--GCCgaGGCGG---------UUAGGUGG-GC- -5' |
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13238 | 3' | -58.4 | NC_003401.1 | + | 23862 | 0.71 | 0.504698 |
Target: 5'- cGCCGcguccaacCGGCgCUGCCGGUCCGCCa- -3' miRNA: 3'- -CGGCuu------GCCGaGGCGGUUAGGUGGgc -5' |
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13238 | 3' | -58.4 | NC_003401.1 | + | 30161 | 0.7 | 0.553152 |
Target: 5'- gGCCGAGgaaGGCcuggCCGCCAuccuuUCgCACCCa -3' miRNA: 3'- -CGGCUUg--CCGa---GGCGGUu----AG-GUGGGc -5' |
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13238 | 3' | -58.4 | NC_003401.1 | + | 42345 | 0.66 | 0.813816 |
Target: 5'- cGCCGG--GGUucaUCUGCCAcgcaaagcacaagAUUCACCCGg -3' miRNA: 3'- -CGGCUugCCG---AGGCGGU-------------UAGGUGGGC- -5' |
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13238 | 3' | -58.4 | NC_003401.1 | + | 48612 | 0.66 | 0.794614 |
Target: 5'- aCCGGaucggaccaaucuaGCGGCaacggCCGCgGAUCUugCCGc -3' miRNA: 3'- cGGCU--------------UGCCGa----GGCGgUUAGGugGGC- -5' |
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13238 | 3' | -58.4 | NC_003401.1 | + | 63958 | 0.67 | 0.77012 |
Target: 5'- aGCUG-ACGGCUuuUCGCCAcgggCCucGCCCGc -3' miRNA: 3'- -CGGCuUGCCGA--GGCGGUua--GG--UGGGC- -5' |
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13238 | 3' | -58.4 | NC_003401.1 | + | 64402 | 0.73 | 0.430494 |
Target: 5'- cGCCGGgucccguACGGggUUGCCGGUaCCGCCCGg -3' miRNA: 3'- -CGGCU-------UGCCgaGGCGGUUA-GGUGGGC- -5' |
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13238 | 3' | -58.4 | NC_003401.1 | + | 69627 | 0.66 | 0.823133 |
Target: 5'- cGCCGcAACGGUccCCGCUAAgagaaagcagCCACgCGa -3' miRNA: 3'- -CGGC-UUGCCGa-GGCGGUUa---------GGUGgGC- -5' |
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13238 | 3' | -58.4 | NC_003401.1 | + | 81832 | 0.67 | 0.76082 |
Target: 5'- aUCGAuccACGGC-CCGCCAuUCCGCgUa -3' miRNA: 3'- cGGCU---UGCCGaGGCGGUuAGGUGgGc -5' |
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13238 | 3' | -58.4 | NC_003401.1 | + | 82473 | 0.66 | 0.823133 |
Target: 5'- uGCCGGAgGGgUCgGCCcaaaacgCCaACCCGc -3' miRNA: 3'- -CGGCUUgCCgAGgCGGuua----GG-UGGGC- -5' |
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13238 | 3' | -58.4 | NC_003401.1 | + | 91721 | 0.66 | 0.814671 |
Target: 5'- uGCCcgGGACGGCauuauuccggUCCGUCGgAUCUACCUu -3' miRNA: 3'- -CGG--CUUGCCG----------AGGCGGU-UAGGUGGGc -5' |
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13238 | 3' | -58.4 | NC_003401.1 | + | 94485 | 0.66 | 0.788356 |
Target: 5'- cGUgGGACGGCguuaaGCCGucCCACCCu -3' miRNA: 3'- -CGgCUUGCCGagg--CGGUuaGGUGGGc -5' |
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13238 | 3' | -58.4 | NC_003401.1 | + | 98594 | 0.68 | 0.692129 |
Target: 5'- cGCCGAACcagaccaGGgUCC-CguGUCCGCCCa -3' miRNA: 3'- -CGGCUUG-------CCgAGGcGguUAGGUGGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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