miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13238 5' -53.2 NC_003401.1 + 11832 0.66 0.955373
Target:  5'- gGUAccGCAAGGUGGCcaccucgguGACCGuCUAUCGa -3'
miRNA:   3'- gCGUc-CGUUCUACCG---------UUGGC-GAUAGU- -5'
13238 5' -53.2 NC_003401.1 + 15876 0.66 0.950805
Target:  5'- aGCAGGCAGGAgaacacgcggagcUGuuGGCCGUccGUCAg -3'
miRNA:   3'- gCGUCCGUUCU-------------ACcgUUGGCGa-UAGU- -5'
13238 5' -53.2 NC_003401.1 + 88479 0.66 0.946843
Target:  5'- aGCGGGCAAGAUcguacaaagaucGGCAACagGCg---- -3'
miRNA:   3'- gCGUCCGUUCUA------------CCGUUGg-CGauagu -5'
13238 5' -53.2 NC_003401.1 + 18380 0.66 0.937302
Target:  5'- gCGCAGGUggGuUGuGCAACCGgaAagCAa -3'
miRNA:   3'- -GCGUCCGuuCuAC-CGUUGGCgaUa-GU- -5'
13238 5' -53.2 NC_003401.1 + 122114 0.67 0.926733
Target:  5'- gGCGcGGCAGGGggcgUGGCAcgGCCGCgc-CAg -3'
miRNA:   3'- gCGU-CCGUUCU----ACCGU--UGGCGauaGU- -5'
13238 5' -53.2 NC_003401.1 + 29706 0.67 0.92106
Target:  5'- aGCAGGCGAcAUGGUAugaCGCUGc-- -3'
miRNA:   3'- gCGUCCGUUcUACCGUug-GCGAUagu -5'
13238 5' -53.2 NC_003401.1 + 93390 0.67 0.915129
Target:  5'- aCGCGGGcCGAGAaGGU-GCUGCUGUUc -3'
miRNA:   3'- -GCGUCC-GUUCUaCCGuUGGCGAUAGu -5'
13238 5' -53.2 NC_003401.1 + 99124 0.67 0.90894
Target:  5'- uGUGGGCAc-GUGGCuuCCGgUAUCAc -3'
miRNA:   3'- gCGUCCGUucUACCGuuGGCgAUAGU- -5'
13238 5' -53.2 NC_003401.1 + 48431 0.68 0.902497
Target:  5'- gGCAgcGGCAAGAUccgcGGCcguuGCCGCUAg-- -3'
miRNA:   3'- gCGU--CCGUUCUA----CCGu---UGGCGAUagu -5'
13238 5' -53.2 NC_003401.1 + 216 0.68 0.888855
Target:  5'- aGCAGGCA----GGCAGCCGUacccggUGUCu -3'
miRNA:   3'- gCGUCCGUucuaCCGUUGGCG------AUAGu -5'
13238 5' -53.2 NC_003401.1 + 132951 0.68 0.888855
Target:  5'- aGCAGGCA----GGCAGCCGUacccggUGUCu -3'
miRNA:   3'- gCGUCCGUucuaCCGUUGGCG------AUAGu -5'
13238 5' -53.2 NC_003401.1 + 52042 0.68 0.881665
Target:  5'- --aAGGaCGAucUGGCGACCGUUGUCGg -3'
miRNA:   3'- gcgUCC-GUUcuACCGUUGGCGAUAGU- -5'
13238 5' -53.2 NC_003401.1 + 8914 0.69 0.858678
Target:  5'- aCGCAGGCGcccuguGgcGGCGACCgGCUGa-- -3'
miRNA:   3'- -GCGUCCGUu-----CuaCCGUUGG-CGAUagu -5'
13238 5' -53.2 NC_003401.1 + 87948 0.7 0.797659
Target:  5'- cCGUGuGGCGGGGUGGCugacACCGCacUCAg -3'
miRNA:   3'- -GCGU-CCGUUCUACCGu---UGGCGauAGU- -5'
13238 5' -53.2 NC_003401.1 + 84045 0.7 0.778631
Target:  5'- aCGUGGGCAAGGgggcgGGCAGCgGCa---- -3'
miRNA:   3'- -GCGUCCGUUCUa----CCGUUGgCGauagu -5'
13238 5' -53.2 NC_003401.1 + 63793 0.71 0.759034
Target:  5'- gGCGGGCGAGGcccgUGGCGAaaaGCcGUCAg -3'
miRNA:   3'- gCGUCCGUUCU----ACCGUUgg-CGaUAGU- -5'
13238 5' -53.2 NC_003401.1 + 127131 0.72 0.697659
Target:  5'- aGCAGuGCGAaGUGGgaccccugggcCGGCCGCUGUCAg -3'
miRNA:   3'- gCGUC-CGUUcUACC-----------GUUGGCGAUAGU- -5'
13238 5' -53.2 NC_003401.1 + 105484 0.73 0.63413
Target:  5'- aCGCaAGGcCAGGGUGGCGGCCGUc---- -3'
miRNA:   3'- -GCG-UCC-GUUCUACCGUUGGCGauagu -5'
13238 5' -53.2 NC_003401.1 + 74735 0.74 0.602214
Target:  5'- aGCAGGCAgAGAUGuGCAccGCCGCccuUCGg -3'
miRNA:   3'- gCGUCCGU-UCUAC-CGU--UGGCGau-AGU- -5'
13238 5' -53.2 NC_003401.1 + 132407 0.75 0.528932
Target:  5'- uCGCcccgGGcGCAAGAUGGCGGCCGCg---- -3'
miRNA:   3'- -GCG----UC-CGUUCUACCGUUGGCGauagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.