miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13239 3' -63.3 NC_003401.1 + 11777 0.66 0.610575
Target:  5'- -gGGCGUcgacggGCCCGGCGuUGG-CUucgCGGUg -3'
miRNA:   3'- ggCCGCG------CGGGCCGCuACCuGA---GCCA- -5'
13239 3' -63.3 NC_003401.1 + 19405 0.66 0.610575
Target:  5'- uUGGCGCauuaCCGGUGAgGGACagGGUc -3'
miRNA:   3'- gGCCGCGcg--GGCCGCUaCCUGagCCA- -5'
13239 3' -63.3 NC_003401.1 + 132654 0.66 0.610575
Target:  5'- gCGGCGcCGCCgGGCucgGccGGAC-CGGg -3'
miRNA:   3'- gGCCGC-GCGGgCCG---CuaCCUGaGCCa -5'
13239 3' -63.3 NC_003401.1 + 132214 0.66 0.610575
Target:  5'- cCCGGagGCGCCCGGCcggcgccgccGccGGGCcgCGGc -3'
miRNA:   3'- -GGCCg-CGCGGGCCG----------CuaCCUGa-GCCa -5'
13239 3' -63.3 NC_003401.1 + 106862 0.66 0.600888
Target:  5'- uUGGCGgGUUCGGUGAgc-ACUCGGg -3'
miRNA:   3'- gGCCGCgCGGGCCGCUaccUGAGCCa -5'
13239 3' -63.3 NC_003401.1 + 64111 0.66 0.597985
Target:  5'- aCCGaGCGCGCCCGcGCcacugaccgcguuuGGUGGuCcgCGGc -3'
miRNA:   3'- -GGC-CGCGCGGGC-CG--------------CUACCuGa-GCCa -5'
13239 3' -63.3 NC_003401.1 + 105077 0.66 0.571976
Target:  5'- gCGGCGUGCCCugguuGCGAUuuccagaccggGGGCcgUCGGa -3'
miRNA:   3'- gGCCGCGCGGGc----CGCUA-----------CCUG--AGCCa -5'
13239 3' -63.3 NC_003401.1 + 63964 0.66 0.552883
Target:  5'- gCgGGCGCGCUCGGUGGUG----UGGUg -3'
miRNA:   3'- -GgCCGCGCGGGCCGCUACcugaGCCA- -5'
13239 3' -63.3 NC_003401.1 + 23704 0.66 0.552883
Target:  5'- aCCGGCaGCG-CCGGU--UGGACgcggCGGa -3'
miRNA:   3'- -GGCCG-CGCgGGCCGcuACCUGa---GCCa -5'
13239 3' -63.3 NC_003401.1 + 9522 0.67 0.533986
Target:  5'- cCCGGCcaguaGgGCgCCGGCGcuaGGGgUCGGUa -3'
miRNA:   3'- -GGCCG-----CgCG-GGCCGCua-CCUgAGCCA- -5'
13239 3' -63.3 NC_003401.1 + 132613 0.67 0.524623
Target:  5'- gUCGGcCGgGCCCGGCGGagcGGcACcCGGg -3'
miRNA:   3'- -GGCC-GCgCGGGCCGCUa--CC-UGaGCCa -5'
13239 3' -63.3 NC_003401.1 + 21359 0.67 0.519035
Target:  5'- cCCGuGCGCgucccaaauuuuuacGCCgCGGCGcgacaguucgGUGGAgUCGGUg -3'
miRNA:   3'- -GGC-CGCG---------------CGG-GCCGC----------UACCUgAGCCA- -5'
13239 3' -63.3 NC_003401.1 + 15588 0.67 0.515323
Target:  5'- -gGGCaGCuaUUGcGUGAUGGACUCGGUc -3'
miRNA:   3'- ggCCG-CGcgGGC-CGCUACCUGAGCCA- -5'
13239 3' -63.3 NC_003401.1 + 23931 0.67 0.515323
Target:  5'- aCCGGCGCgGCCCucGGUGAUuGACg-GGa -3'
miRNA:   3'- -GGCCGCG-CGGG--CCGCUAcCUGagCCa -5'
13239 3' -63.3 NC_003401.1 + 105994 0.67 0.496929
Target:  5'- gCCGccGCGCGCCUGGCcaaGGcGCUUGGg -3'
miRNA:   3'- -GGC--CGCGCGGGCCGcuaCC-UGAGCCa -5'
13239 3' -63.3 NC_003401.1 + 115760 0.68 0.487843
Target:  5'- uCCGGgGUGCuCCgGGUGggGGcgGCUCGGc -3'
miRNA:   3'- -GGCCgCGCG-GG-CCGCuaCC--UGAGCCa -5'
13239 3' -63.3 NC_003401.1 + 132388 0.68 0.487843
Target:  5'- gCGGcCGCgGCCCGGCGgcGGcGC-CGGc -3'
miRNA:   3'- gGCC-GCG-CGGGCCGCuaCC-UGaGCCa -5'
13239 3' -63.3 NC_003401.1 + 20281 0.68 0.469912
Target:  5'- aCGaCGCGCCCGGgGAcgcGGACgccgCGGc -3'
miRNA:   3'- gGCcGCGCGGGCCgCUa--CCUGa---GCCa -5'
13239 3' -63.3 NC_003401.1 + 101322 0.68 0.461074
Target:  5'- gCGGCG-GCCCuccaGGCGAUGGACa---- -3'
miRNA:   3'- gGCCGCgCGGG----CCGCUACCUGagcca -5'
13239 3' -63.3 NC_003401.1 + 13250 0.68 0.452324
Target:  5'- -gGGCGCGaguagcagaucCCCGG-GGUGGACgugCGGa -3'
miRNA:   3'- ggCCGCGC-----------GGGCCgCUACCUGa--GCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.