Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 13239 | 3' | -63.3 | NC_003401.1 | + | 132654 | 0.66 | 0.610575 |
|
Target: 5'- gCGGCGcCGCCgGGCucgGccGGAC-CGGg -3' miRNA: 3'- gGCCGC-GCGGgCCG---CuaCCUGaGCCa -5' |
|||||||
| 13239 | 3' | -63.3 | NC_003401.1 | + | 11777 | 0.66 | 0.610575 |
|
Target: 5'- -gGGCGUcgacggGCCCGGCGuUGG-CUucgCGGUg -3' miRNA: 3'- ggCCGCG------CGGGCCGCuACCuGA---GCCA- -5' |
|||||||
| 13239 | 3' | -63.3 | NC_003401.1 | + | 64111 | 0.66 | 0.597985 |
|
Target: 5'- aCCGaGCGCGCCCGcGCcacugaccgcguuuGGUGGuCcgCGGc -3' miRNA: 3'- -GGC-CGCGCGGGC-CG--------------CUACCuGa-GCCa -5' |
|||||||
| 13239 | 3' | -63.3 | NC_003401.1 | + | 105077 | 0.66 | 0.571976 |
|
Target: 5'- gCGGCGUGCCCugguuGCGAUuuccagaccggGGGCcgUCGGa -3' miRNA: 3'- gGCCGCGCGGGc----CGCUA-----------CCUG--AGCCa -5' |
|||||||
| 13239 | 3' | -63.3 | NC_003401.1 | + | 132214 | 0.66 | 0.610575 |
|
Target: 5'- cCCGGagGCGCCCGGCcggcgccgccGccGGGCcgCGGc -3' miRNA: 3'- -GGCCg-CGCGGGCCG----------CuaCCUGa-GCCa -5' |
|||||||
| 13239 | 3' | -63.3 | NC_003401.1 | + | 63964 | 0.66 | 0.552883 |
|
Target: 5'- gCgGGCGCGCUCGGUGGUG----UGGUg -3' miRNA: 3'- -GgCCGCGCGGGCCGCUACcugaGCCA- -5' |
|||||||
| 13239 | 3' | -63.3 | NC_003401.1 | + | 23704 | 0.66 | 0.552883 |
|
Target: 5'- aCCGGCaGCG-CCGGU--UGGACgcggCGGa -3' miRNA: 3'- -GGCCG-CGCgGGCCGcuACCUGa---GCCa -5' |
|||||||
| 13239 | 3' | -63.3 | NC_003401.1 | + | 19405 | 0.66 | 0.610575 |
|
Target: 5'- uUGGCGCauuaCCGGUGAgGGACagGGUc -3' miRNA: 3'- gGCCGCGcg--GGCCGCUaCCUGagCCA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home