Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13239 | 3' | -63.3 | NC_003401.1 | + | 104678 | 1.08 | 0.000757 |
Target: 5'- uCCGGCGCGCCCGGCGAUGGACUCGGUg -3' miRNA: 3'- -GGCCGCGCGGGCCGCUACCUGAGCCA- -5' |
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13239 | 3' | -63.3 | NC_003401.1 | + | 132453 | 0.8 | 0.083912 |
Target: 5'- gCCGGCgGCGCCCGGCGcgcGGGCcCGGg -3' miRNA: 3'- -GGCCG-CGCGGGCCGCua-CCUGaGCCa -5' |
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13239 | 3' | -63.3 | NC_003401.1 | + | 103308 | 0.74 | 0.216583 |
Target: 5'- gUCGGCGUGUaguccaugggaaCGGCGGUGGcCUCGGa -3' miRNA: 3'- -GGCCGCGCGg-----------GCCGCUACCuGAGCCa -5' |
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13239 | 3' | -63.3 | NC_003401.1 | + | 133711 | 0.73 | 0.222714 |
Target: 5'- gCCGG-GUGCCCGGCGGUccGGGCggGGg -3' miRNA: 3'- -GGCCgCGCGGGCCGCUA--CCUGagCCa -5' |
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13239 | 3' | -63.3 | NC_003401.1 | + | 132533 | 0.72 | 0.261462 |
Target: 5'- cCCGGCGCGC--GGCGcgGGGCggcCGGg -3' miRNA: 3'- -GGCCGCGCGggCCGCuaCCUGa--GCCa -5' |
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13239 | 3' | -63.3 | NC_003401.1 | + | 132677 | 0.72 | 0.292381 |
Target: 5'- cCCGGgGCGCCuCGGCG--GGGCcCGGc -3' miRNA: 3'- -GGCCgCGCGG-GCCGCuaCCUGaGCCa -5' |
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13239 | 3' | -63.3 | NC_003401.1 | + | 128035 | 0.71 | 0.305525 |
Target: 5'- gCUGGCGCGCaCCGGCacgccUGucCUCGGUg -3' miRNA: 3'- -GGCCGCGCG-GGCCGcu---ACcuGAGCCA- -5' |
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13239 | 3' | -63.3 | NC_003401.1 | + | 107791 | 0.69 | 0.401828 |
Target: 5'- -gGGCcccGCGCCCGGUGGcgcGGACcCGGg -3' miRNA: 3'- ggCCG---CGCGGGCCGCUa--CCUGaGCCa -5' |
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13239 | 3' | -63.3 | NC_003401.1 | + | 13250 | 0.68 | 0.452324 |
Target: 5'- -gGGCGCGaguagcagaucCCCGG-GGUGGACgugCGGa -3' miRNA: 3'- ggCCGCGC-----------GGGCCgCUACCUGa--GCCa -5' |
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13239 | 3' | -63.3 | NC_003401.1 | + | 101322 | 0.68 | 0.461074 |
Target: 5'- gCGGCG-GCCCuccaGGCGAUGGACa---- -3' miRNA: 3'- gGCCGCgCGGG----CCGCUACCUGagcca -5' |
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13239 | 3' | -63.3 | NC_003401.1 | + | 20281 | 0.68 | 0.469912 |
Target: 5'- aCGaCGCGCCCGGgGAcgcGGACgccgCGGc -3' miRNA: 3'- gGCcGCGCGGGCCgCUa--CCUGa---GCCa -5' |
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13239 | 3' | -63.3 | NC_003401.1 | + | 132388 | 0.68 | 0.487843 |
Target: 5'- gCGGcCGCgGCCCGGCGgcGGcGC-CGGc -3' miRNA: 3'- gGCC-GCG-CGGGCCGCuaCC-UGaGCCa -5' |
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13239 | 3' | -63.3 | NC_003401.1 | + | 115760 | 0.68 | 0.487843 |
Target: 5'- uCCGGgGUGCuCCgGGUGggGGcgGCUCGGc -3' miRNA: 3'- -GGCCgCGCG-GG-CCGCuaCC--UGAGCCa -5' |
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13239 | 3' | -63.3 | NC_003401.1 | + | 105994 | 0.67 | 0.496929 |
Target: 5'- gCCGccGCGCGCCUGGCcaaGGcGCUUGGg -3' miRNA: 3'- -GGC--CGCGCGGGCCGcuaCC-UGAGCCa -5' |
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13239 | 3' | -63.3 | NC_003401.1 | + | 15588 | 0.67 | 0.515323 |
Target: 5'- -gGGCaGCuaUUGcGUGAUGGACUCGGUc -3' miRNA: 3'- ggCCG-CGcgGGC-CGCUACCUGAGCCA- -5' |
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13239 | 3' | -63.3 | NC_003401.1 | + | 23931 | 0.67 | 0.515323 |
Target: 5'- aCCGGCGCgGCCCucGGUGAUuGACg-GGa -3' miRNA: 3'- -GGCCGCG-CGGG--CCGCUAcCUGagCCa -5' |
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13239 | 3' | -63.3 | NC_003401.1 | + | 21359 | 0.67 | 0.519035 |
Target: 5'- cCCGuGCGCgucccaaauuuuuacGCCgCGGCGcgacaguucgGUGGAgUCGGUg -3' miRNA: 3'- -GGC-CGCG---------------CGG-GCCGC----------UACCUgAGCCA- -5' |
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13239 | 3' | -63.3 | NC_003401.1 | + | 132613 | 0.67 | 0.524623 |
Target: 5'- gUCGGcCGgGCCCGGCGGagcGGcACcCGGg -3' miRNA: 3'- -GGCC-GCgCGGGCCGCUa--CC-UGaGCCa -5' |
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13239 | 3' | -63.3 | NC_003401.1 | + | 9522 | 0.67 | 0.533986 |
Target: 5'- cCCGGCcaguaGgGCgCCGGCGcuaGGGgUCGGUa -3' miRNA: 3'- -GGCCG-----CgCG-GGCCGCua-CCUgAGCCA- -5' |
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13239 | 3' | -63.3 | NC_003401.1 | + | 23704 | 0.66 | 0.552883 |
Target: 5'- aCCGGCaGCG-CCGGU--UGGACgcggCGGa -3' miRNA: 3'- -GGCCG-CGCgGGCCGcuACCUGa---GCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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