Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13239 | 3' | -63.3 | NC_003401.1 | + | 132214 | 0.66 | 0.610575 |
Target: 5'- cCCGGagGCGCCCGGCcggcgccgccGccGGGCcgCGGc -3' miRNA: 3'- -GGCCg-CGCGGGCCG----------CuaCCUGa-GCCa -5' |
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13239 | 3' | -63.3 | NC_003401.1 | + | 132388 | 0.68 | 0.487843 |
Target: 5'- gCGGcCGCgGCCCGGCGgcGGcGC-CGGc -3' miRNA: 3'- gGCC-GCG-CGGGCCGCuaCC-UGaGCCa -5' |
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13239 | 3' | -63.3 | NC_003401.1 | + | 132453 | 0.8 | 0.083912 |
Target: 5'- gCCGGCgGCGCCCGGCGcgcGGGCcCGGg -3' miRNA: 3'- -GGCCG-CGCGGGCCGCua-CCUGaGCCa -5' |
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13239 | 3' | -63.3 | NC_003401.1 | + | 132533 | 0.72 | 0.261462 |
Target: 5'- cCCGGCGCGC--GGCGcgGGGCggcCGGg -3' miRNA: 3'- -GGCCGCGCGggCCGCuaCCUGa--GCCa -5' |
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13239 | 3' | -63.3 | NC_003401.1 | + | 132613 | 0.67 | 0.524623 |
Target: 5'- gUCGGcCGgGCCCGGCGGagcGGcACcCGGg -3' miRNA: 3'- -GGCC-GCgCGGGCCGCUa--CC-UGaGCCa -5' |
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13239 | 3' | -63.3 | NC_003401.1 | + | 132654 | 0.66 | 0.610575 |
Target: 5'- gCGGCGcCGCCgGGCucgGccGGAC-CGGg -3' miRNA: 3'- gGCCGC-GCGGgCCG---CuaCCUGaGCCa -5' |
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13239 | 3' | -63.3 | NC_003401.1 | + | 132677 | 0.72 | 0.292381 |
Target: 5'- cCCGGgGCGCCuCGGCG--GGGCcCGGc -3' miRNA: 3'- -GGCCgCGCGG-GCCGCuaCCUGaGCCa -5' |
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13239 | 3' | -63.3 | NC_003401.1 | + | 133711 | 0.73 | 0.222714 |
Target: 5'- gCCGG-GUGCCCGGCGGUccGGGCggGGg -3' miRNA: 3'- -GGCCgCGCGGGCCGCUA--CCUGagCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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