miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13239 5' -53.5 NC_003401.1 + 109490 0.66 0.960922
Target:  5'- aGACgAAgcuGCCUgUCAUGgGCGCGGUu -3'
miRNA:   3'- aCUGgUUag-UGGA-AGUGCaCGCGCCG- -5'
13239 5' -53.5 NC_003401.1 + 42748 0.66 0.960922
Target:  5'- aUGuCCGAgguaaUCGCCgcaACGUGgGCGGg -3'
miRNA:   3'- -ACuGGUU-----AGUGGaagUGCACgCGCCg -5'
13239 5' -53.5 NC_003401.1 + 111187 0.66 0.960922
Target:  5'- -uGuuGGUCGuCCUUUucUGUGCGCGGCc -3'
miRNA:   3'- acUggUUAGU-GGAAGu-GCACGCGCCG- -5'
13239 5' -53.5 NC_003401.1 + 17020 0.66 0.960922
Target:  5'- cGACCuauauuUCGacaaaCUggugCACG-GCGCGGCc -3'
miRNA:   3'- aCUGGuu----AGUg----GAa---GUGCaCGCGCCG- -5'
13239 5' -53.5 NC_003401.1 + 69496 0.66 0.953235
Target:  5'- gGACCcuucCACCUgccgagACGUGC-CGGCa -3'
miRNA:   3'- aCUGGuua-GUGGAag----UGCACGcGCCG- -5'
13239 5' -53.5 NC_003401.1 + 58366 0.66 0.953235
Target:  5'- -cGCCGAUUuuACC--CACGcGCGUGGCa -3'
miRNA:   3'- acUGGUUAG--UGGaaGUGCaCGCGCCG- -5'
13239 5' -53.5 NC_003401.1 + 6015 0.66 0.953235
Target:  5'- cGGCCAcaAUCGCaCgcCACGUGaCGUuaaGGCg -3'
miRNA:   3'- aCUGGU--UAGUG-GaaGUGCAC-GCG---CCG- -5'
13239 5' -53.5 NC_003401.1 + 5840 0.66 0.949034
Target:  5'- aUGACUcAUaCGCCUuaacgUCACGUG-GCGuGCg -3'
miRNA:   3'- -ACUGGuUA-GUGGA-----AGUGCACgCGC-CG- -5'
13239 5' -53.5 NC_003401.1 + 44697 0.66 0.949034
Target:  5'- gGACC---CACCgggUCugGUGUuuGCGGUu -3'
miRNA:   3'- aCUGGuuaGUGGa--AGugCACG--CGCCG- -5'
13239 5' -53.5 NC_003401.1 + 83219 0.66 0.948601
Target:  5'- gGACCGGccgcuccauauccUCGCC---GCGUGCaCGGCa -3'
miRNA:   3'- aCUGGUU-------------AGUGGaagUGCACGcGCCG- -5'
13239 5' -53.5 NC_003401.1 + 111481 0.66 0.94459
Target:  5'- cGAuCCGGacUCACUgucaCACGUGCGCGa- -3'
miRNA:   3'- aCU-GGUU--AGUGGaa--GUGCACGCGCcg -5'
13239 5' -53.5 NC_003401.1 + 22004 0.66 0.94459
Target:  5'- gGGCCAAUagaaGCa---ACGUGCgagGCGGCa -3'
miRNA:   3'- aCUGGUUAg---UGgaagUGCACG---CGCCG- -5'
13239 5' -53.5 NC_003401.1 + 103683 0.67 0.9399
Target:  5'- cGACCAcggaAUCGCCguaagauCGgagGcCGCGGCg -3'
miRNA:   3'- aCUGGU----UAGUGGaagu---GCa--C-GCGCCG- -5'
13239 5' -53.5 NC_003401.1 + 11667 0.67 0.9399
Target:  5'- gGGCCGAggcguuuaAgUUUCGCGUGUGCaGCg -3'
miRNA:   3'- aCUGGUUag------UgGAAGUGCACGCGcCG- -5'
13239 5' -53.5 NC_003401.1 + 31648 0.67 0.9399
Target:  5'- cGACCAGUUuucguguCC-UCuuG-GCGCGGCu -3'
miRNA:   3'- aCUGGUUAGu------GGaAGugCaCGCGCCG- -5'
13239 5' -53.5 NC_003401.1 + 16370 0.67 0.9399
Target:  5'- -cACCGAcUC-CCUcuuuaUCGCGUGCGaCGGUu -3'
miRNA:   3'- acUGGUU-AGuGGA-----AGUGCACGC-GCCG- -5'
13239 5' -53.5 NC_003401.1 + 125069 0.67 0.9399
Target:  5'- aGGCCAGguggCGCCcgUCcggugACGUGaugGCGGCc -3'
miRNA:   3'- aCUGGUUa---GUGGa-AG-----UGCACg--CGCCG- -5'
13239 5' -53.5 NC_003401.1 + 8857 0.67 0.938932
Target:  5'- -aACCugggguaCUUCGCGggGCGCGGCg -3'
miRNA:   3'- acUGGuuagug-GAAGUGCa-CGCGCCG- -5'
13239 5' -53.5 NC_003401.1 + 16326 0.67 0.934961
Target:  5'- gUGACC----GCCcgUCACGgcGCGCGGUu -3'
miRNA:   3'- -ACUGGuuagUGGa-AGUGCa-CGCGCCG- -5'
13239 5' -53.5 NC_003401.1 + 125840 0.67 0.934961
Target:  5'- aUGGCCGccuUCACCaacgucgggUUCgACGU-CGCGGCc -3'
miRNA:   3'- -ACUGGUu--AGUGG---------AAG-UGCAcGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.