miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13239 5' -53.5 NC_003401.1 + 55989 0.68 0.900079
Target:  5'- aGGCUggUCAUUguugUCGCGUGCaCGcGCu -3'
miRNA:   3'- aCUGGuuAGUGGa---AGUGCACGcGC-CG- -5'
13239 5' -53.5 NC_003401.1 + 57708 0.68 0.912703
Target:  5'- -aACCGGUUACUugccaccauuUUUACGUGggcCGCGGCg -3'
miRNA:   3'- acUGGUUAGUGG----------AAGUGCAC---GCGCCG- -5'
13239 5' -53.5 NC_003401.1 + 58366 0.66 0.953235
Target:  5'- -cGCCGAUUuuACC--CACGcGCGUGGCa -3'
miRNA:   3'- acUGGUUAG--UGGaaGUGCaCGCGCCG- -5'
13239 5' -53.5 NC_003401.1 + 60130 0.7 0.823133
Target:  5'- cGACCAG-CGCUUUUAgagGCGCGGUa -3'
miRNA:   3'- aCUGGUUaGUGGAAGUgcaCGCGCCG- -5'
13239 5' -53.5 NC_003401.1 + 64502 0.7 0.805322
Target:  5'- cGGCCAGggagaACCgguugcCGCGUGgGCGGUa -3'
miRNA:   3'- aCUGGUUag---UGGaa----GUGCACgCGCCG- -5'
13239 5' -53.5 NC_003401.1 + 69496 0.66 0.953235
Target:  5'- gGACCcuucCACCUgccgagACGUGC-CGGCa -3'
miRNA:   3'- aCUGGuua-GUGGAag----UGCACGcGCCG- -5'
13239 5' -53.5 NC_003401.1 + 71702 0.69 0.871945
Target:  5'- aGGCUccccgaGCCUUCAUGUuuGCGGCa -3'
miRNA:   3'- aCUGGuuag--UGGAAGUGCAcgCGCCG- -5'
13239 5' -53.5 NC_003401.1 + 83219 0.66 0.948601
Target:  5'- gGACCGGccgcuccauauccUCGCC---GCGUGCaCGGCa -3'
miRNA:   3'- aCUGGUU-------------AGUGGaagUGCACGcGCCG- -5'
13239 5' -53.5 NC_003401.1 + 85936 0.68 0.912703
Target:  5'- cGAUCAAUUuCCgUUCACG-GCGCuGGUc -3'
miRNA:   3'- aCUGGUUAGuGG-AAGUGCaCGCG-CCG- -5'
13239 5' -53.5 NC_003401.1 + 93318 0.77 0.416497
Target:  5'- gGACUuuuUCGCCUUCGCGgaaucaUGCGCGGg -3'
miRNA:   3'- aCUGGuu-AGUGGAAGUGC------ACGCGCCg -5'
13239 5' -53.5 NC_003401.1 + 101775 0.67 0.929772
Target:  5'- -cGCCAGUuuuuuuugcgCAUCU--GCGUGCGUGGCc -3'
miRNA:   3'- acUGGUUA----------GUGGAagUGCACGCGCCG- -5'
13239 5' -53.5 NC_003401.1 + 103683 0.67 0.9399
Target:  5'- cGACCAcggaAUCGCCguaagauCGgagGcCGCGGCg -3'
miRNA:   3'- aCUGGU----UAGUGGaagu---GCa--C-GCGCCG- -5'
13239 5' -53.5 NC_003401.1 + 104712 1.13 0.002468
Target:  5'- cUGACCAAUCACCUUCACGUGCGCGGCa -3'
miRNA:   3'- -ACUGGUUAGUGGAAGUGCACGCGCCG- -5'
13239 5' -53.5 NC_003401.1 + 105501 0.68 0.906514
Target:  5'- cGGCC-GUCACCUgggcgcUCACGacgauagacgGCGUGGUu -3'
miRNA:   3'- aCUGGuUAGUGGA------AGUGCa---------CGCGCCG- -5'
13239 5' -53.5 NC_003401.1 + 105824 0.7 0.831769
Target:  5'- cGGCCAcgcccaagCGCCUUgGCcaggcGCGCGGCg -3'
miRNA:   3'- aCUGGUua------GUGGAAgUGca---CGCGCCG- -5'
13239 5' -53.5 NC_003401.1 + 109490 0.66 0.960922
Target:  5'- aGACgAAgcuGCCUgUCAUGgGCGCGGUu -3'
miRNA:   3'- aCUGgUUag-UGGA-AGUGCaCGCGCCG- -5'
13239 5' -53.5 NC_003401.1 + 111187 0.66 0.960922
Target:  5'- -uGuuGGUCGuCCUUUucUGUGCGCGGCc -3'
miRNA:   3'- acUggUUAGU-GGAAGu-GCACGCGCCG- -5'
13239 5' -53.5 NC_003401.1 + 111481 0.66 0.94459
Target:  5'- cGAuCCGGacUCACUgucaCACGUGCGCGa- -3'
miRNA:   3'- aCU-GGUU--AGUGGaa--GUGCACGCGCcg -5'
13239 5' -53.5 NC_003401.1 + 112094 0.69 0.848464
Target:  5'- cGuCCGGUCGCCUgacgcUAgGUGCGUacGGCg -3'
miRNA:   3'- aCuGGUUAGUGGAa----GUgCACGCG--CCG- -5'
13239 5' -53.5 NC_003401.1 + 118726 0.7 0.796165
Target:  5'- cGGCCGcgC-CgCUUgGCG-GCGCGGCu -3'
miRNA:   3'- aCUGGUuaGuG-GAAgUGCaCGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.