Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13239 | 5' | -53.5 | NC_003401.1 | + | 125840 | 0.67 | 0.934961 |
Target: 5'- aUGGCCGccuUCACCaacgucgggUUCgACGU-CGCGGCc -3' miRNA: 3'- -ACUGGUu--AGUGG---------AAG-UGCAcGCGCCG- -5' |
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13239 | 5' | -53.5 | NC_003401.1 | + | 125069 | 0.67 | 0.9399 |
Target: 5'- aGGCCAGguggCGCCcgUCcggugACGUGaugGCGGCc -3' miRNA: 3'- aCUGGUUa---GUGGa-AG-----UGCACg--CGCCG- -5' |
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13239 | 5' | -53.5 | NC_003401.1 | + | 122406 | 0.68 | 0.900079 |
Target: 5'- cGGCgCucugcgcCACCUaacggUCaauGCGUGCGCGGCa -3' miRNA: 3'- aCUG-Guua----GUGGA-----AG---UGCACGCGCCG- -5' |
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13239 | 5' | -53.5 | NC_003401.1 | + | 118726 | 0.7 | 0.796165 |
Target: 5'- cGGCCGcgC-CgCUUgGCG-GCGCGGCu -3' miRNA: 3'- aCUGGUuaGuG-GAAgUGCaCGCGCCG- -5' |
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13239 | 5' | -53.5 | NC_003401.1 | + | 112094 | 0.69 | 0.848464 |
Target: 5'- cGuCCGGUCGCCUgacgcUAgGUGCGUacGGCg -3' miRNA: 3'- aCuGGUUAGUGGAa----GUgCACGCG--CCG- -5' |
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13239 | 5' | -53.5 | NC_003401.1 | + | 111481 | 0.66 | 0.94459 |
Target: 5'- cGAuCCGGacUCACUgucaCACGUGCGCGa- -3' miRNA: 3'- aCU-GGUU--AGUGGaa--GUGCACGCGCcg -5' |
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13239 | 5' | -53.5 | NC_003401.1 | + | 111187 | 0.66 | 0.960922 |
Target: 5'- -uGuuGGUCGuCCUUUucUGUGCGCGGCc -3' miRNA: 3'- acUggUUAGU-GGAAGu-GCACGCGCCG- -5' |
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13239 | 5' | -53.5 | NC_003401.1 | + | 109490 | 0.66 | 0.960922 |
Target: 5'- aGACgAAgcuGCCUgUCAUGgGCGCGGUu -3' miRNA: 3'- aCUGgUUag-UGGA-AGUGCaCGCGCCG- -5' |
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13239 | 5' | -53.5 | NC_003401.1 | + | 105824 | 0.7 | 0.831769 |
Target: 5'- cGGCCAcgcccaagCGCCUUgGCcaggcGCGCGGCg -3' miRNA: 3'- aCUGGUua------GUGGAAgUGca---CGCGCCG- -5' |
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13239 | 5' | -53.5 | NC_003401.1 | + | 105501 | 0.68 | 0.906514 |
Target: 5'- cGGCC-GUCACCUgggcgcUCACGacgauagacgGCGUGGUu -3' miRNA: 3'- aCUGGuUAGUGGA------AGUGCa---------CGCGCCG- -5' |
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13239 | 5' | -53.5 | NC_003401.1 | + | 104712 | 1.13 | 0.002468 |
Target: 5'- cUGACCAAUCACCUUCACGUGCGCGGCa -3' miRNA: 3'- -ACUGGUUAGUGGAAGUGCACGCGCCG- -5' |
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13239 | 5' | -53.5 | NC_003401.1 | + | 103683 | 0.67 | 0.9399 |
Target: 5'- cGACCAcggaAUCGCCguaagauCGgagGcCGCGGCg -3' miRNA: 3'- aCUGGU----UAGUGGaagu---GCa--C-GCGCCG- -5' |
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13239 | 5' | -53.5 | NC_003401.1 | + | 101775 | 0.67 | 0.929772 |
Target: 5'- -cGCCAGUuuuuuuugcgCAUCU--GCGUGCGUGGCc -3' miRNA: 3'- acUGGUUA----------GUGGAagUGCACGCGCCG- -5' |
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13239 | 5' | -53.5 | NC_003401.1 | + | 93318 | 0.77 | 0.416497 |
Target: 5'- gGACUuuuUCGCCUUCGCGgaaucaUGCGCGGg -3' miRNA: 3'- aCUGGuu-AGUGGAAGUGC------ACGCGCCg -5' |
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13239 | 5' | -53.5 | NC_003401.1 | + | 85936 | 0.68 | 0.912703 |
Target: 5'- cGAUCAAUUuCCgUUCACG-GCGCuGGUc -3' miRNA: 3'- aCUGGUUAGuGG-AAGUGCaCGCG-CCG- -5' |
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13239 | 5' | -53.5 | NC_003401.1 | + | 83219 | 0.66 | 0.948601 |
Target: 5'- gGACCGGccgcuccauauccUCGCC---GCGUGCaCGGCa -3' miRNA: 3'- aCUGGUU-------------AGUGGaagUGCACGcGCCG- -5' |
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13239 | 5' | -53.5 | NC_003401.1 | + | 71702 | 0.69 | 0.871945 |
Target: 5'- aGGCUccccgaGCCUUCAUGUuuGCGGCa -3' miRNA: 3'- aCUGGuuag--UGGAAGUGCAcgCGCCG- -5' |
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13239 | 5' | -53.5 | NC_003401.1 | + | 69496 | 0.66 | 0.953235 |
Target: 5'- gGACCcuucCACCUgccgagACGUGC-CGGCa -3' miRNA: 3'- aCUGGuua-GUGGAag----UGCACGcGCCG- -5' |
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13239 | 5' | -53.5 | NC_003401.1 | + | 64502 | 0.7 | 0.805322 |
Target: 5'- cGGCCAGggagaACCgguugcCGCGUGgGCGGUa -3' miRNA: 3'- aCUGGUUag---UGGaa----GUGCACgCGCCG- -5' |
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13239 | 5' | -53.5 | NC_003401.1 | + | 60130 | 0.7 | 0.823133 |
Target: 5'- cGACCAG-CGCUUUUAgagGCGCGGUa -3' miRNA: 3'- aCUGGUUaGUGGAAGUgcaCGCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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