miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13239 5' -53.5 NC_003401.1 + 58366 0.66 0.953235
Target:  5'- -cGCCGAUUuuACC--CACGcGCGUGGCa -3'
miRNA:   3'- acUGGUUAG--UGGaaGUGCaCGCGCCG- -5'
13239 5' -53.5 NC_003401.1 + 57708 0.68 0.912703
Target:  5'- -aACCGGUUACUugccaccauuUUUACGUGggcCGCGGCg -3'
miRNA:   3'- acUGGUUAGUGG----------AAGUGCAC---GCGCCG- -5'
13239 5' -53.5 NC_003401.1 + 55989 0.68 0.900079
Target:  5'- aGGCUggUCAUUguugUCGCGUGCaCGcGCu -3'
miRNA:   3'- aCUGGuuAGUGGa---AGUGCACGcGC-CG- -5'
13239 5' -53.5 NC_003401.1 + 53106 0.68 0.905882
Target:  5'- cUGGCCGGU-GCCUUaaaauggUACGUGUGCuGCa -3'
miRNA:   3'- -ACUGGUUAgUGGAA-------GUGCACGCGcCG- -5'
13239 5' -53.5 NC_003401.1 + 44697 0.66 0.949034
Target:  5'- gGACC---CACCgggUCugGUGUuuGCGGUu -3'
miRNA:   3'- aCUGGuuaGUGGa--AGugCACG--CGCCG- -5'
13239 5' -53.5 NC_003401.1 + 42748 0.66 0.960922
Target:  5'- aUGuCCGAgguaaUCGCCgcaACGUGgGCGGg -3'
miRNA:   3'- -ACuGGUU-----AGUGGaagUGCACgCGCCg -5'
13239 5' -53.5 NC_003401.1 + 31648 0.67 0.9399
Target:  5'- cGACCAGUUuucguguCC-UCuuG-GCGCGGCu -3'
miRNA:   3'- aCUGGUUAGu------GGaAGugCaCGCGCCG- -5'
13239 5' -53.5 NC_003401.1 + 23381 0.73 0.656075
Target:  5'- ---aCGGUCGCCagUCGCGcGCGUGGCa -3'
miRNA:   3'- acugGUUAGUGGa-AGUGCaCGCGCCG- -5'
13239 5' -53.5 NC_003401.1 + 22004 0.66 0.94459
Target:  5'- gGGCCAAUagaaGCa---ACGUGCgagGCGGCa -3'
miRNA:   3'- aCUGGUUAg---UGgaagUGCACG---CGCCG- -5'
13239 5' -53.5 NC_003401.1 + 21778 0.72 0.687317
Target:  5'- cGGCCGucCGCUg-CGCGUGcCGCGGCg -3'
miRNA:   3'- aCUGGUuaGUGGaaGUGCAC-GCGCCG- -5'
13239 5' -53.5 NC_003401.1 + 21640 0.68 0.893401
Target:  5'- cGGCCGcggCACCUUCGgGUGCGgaaaaaaccCGGa -3'
miRNA:   3'- aCUGGUua-GUGGAAGUgCACGC---------GCCg -5'
13239 5' -53.5 NC_003401.1 + 20523 0.68 0.912703
Target:  5'- aUGACCGGuuaaauuacUCGCUUacaaUCGCGgGCgGCGGCc -3'
miRNA:   3'- -ACUGGUU---------AGUGGA----AGUGCaCG-CGCCG- -5'
13239 5' -53.5 NC_003401.1 + 17020 0.66 0.960922
Target:  5'- cGACCuauauuUCGacaaaCUggugCACG-GCGCGGCc -3'
miRNA:   3'- aCUGGuu----AGUg----GAa---GUGCaCGCGCCG- -5'
13239 5' -53.5 NC_003401.1 + 16370 0.67 0.9399
Target:  5'- -cACCGAcUC-CCUcuuuaUCGCGUGCGaCGGUu -3'
miRNA:   3'- acUGGUU-AGuGGA-----AGUGCACGC-GCCG- -5'
13239 5' -53.5 NC_003401.1 + 16326 0.67 0.934961
Target:  5'- gUGACC----GCCcgUCACGgcGCGCGGUu -3'
miRNA:   3'- -ACUGGuuagUGGa-AGUGCa-CGCGCCG- -5'
13239 5' -53.5 NC_003401.1 + 15206 0.71 0.786853
Target:  5'- aGAUCugGAUCACCgcgUCGcCGUcgcGCGUGGCg -3'
miRNA:   3'- aCUGG--UUAGUGGa--AGU-GCA---CGCGCCG- -5'
13239 5' -53.5 NC_003401.1 + 14763 0.7 0.814314
Target:  5'- cGACCcucagcGAcCGCCUcgUCGCGUGCGgGuGCg -3'
miRNA:   3'- aCUGG------UUaGUGGA--AGUGCACGCgC-CG- -5'
13239 5' -53.5 NC_003401.1 + 11667 0.67 0.9399
Target:  5'- gGGCCGAggcguuuaAgUUUCGCGUGUGCaGCg -3'
miRNA:   3'- aCUGGUUag------UgGAAGUGCACGCGcCG- -5'
13239 5' -53.5 NC_003401.1 + 10334 0.68 0.879329
Target:  5'- gGACCGGaCGCCgu-GC-UGCGUGGCg -3'
miRNA:   3'- aCUGGUUaGUGGaagUGcACGCGCCG- -5'
13239 5' -53.5 NC_003401.1 + 8857 0.67 0.938932
Target:  5'- -aACCugggguaCUUCGCGggGCGCGGCg -3'
miRNA:   3'- acUGGuuagug-GAAGUGCa-CGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.