miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13239 5' -53.5 NC_003401.1 + 22004 0.66 0.94459
Target:  5'- gGGCCAAUagaaGCa---ACGUGCgagGCGGCa -3'
miRNA:   3'- aCUGGUUAg---UGgaagUGCACG---CGCCG- -5'
13239 5' -53.5 NC_003401.1 + 57708 0.68 0.912703
Target:  5'- -aACCGGUUACUugccaccauuUUUACGUGggcCGCGGCg -3'
miRNA:   3'- acUGGUUAGUGG----------AAGUGCAC---GCGCCG- -5'
13239 5' -53.5 NC_003401.1 + 16326 0.67 0.934961
Target:  5'- gUGACC----GCCcgUCACGgcGCGCGGUu -3'
miRNA:   3'- -ACUGGuuagUGGa-AGUGCa-CGCGCCG- -5'
13239 5' -53.5 NC_003401.1 + 8857 0.67 0.938932
Target:  5'- -aACCugggguaCUUCGCGggGCGCGGCg -3'
miRNA:   3'- acUGGuuagug-GAAGUGCa-CGCGCCG- -5'
13239 5' -53.5 NC_003401.1 + 125069 0.67 0.9399
Target:  5'- aGGCCAGguggCGCCcgUCcggugACGUGaugGCGGCc -3'
miRNA:   3'- aCUGGUUa---GUGGa-AG-----UGCACg--CGCCG- -5'
13239 5' -53.5 NC_003401.1 + 16370 0.67 0.9399
Target:  5'- -cACCGAcUC-CCUcuuuaUCGCGUGCGaCGGUu -3'
miRNA:   3'- acUGGUU-AGuGGA-----AGUGCACGC-GCCG- -5'
13239 5' -53.5 NC_003401.1 + 31648 0.67 0.9399
Target:  5'- cGACCAGUUuucguguCC-UCuuG-GCGCGGCu -3'
miRNA:   3'- aCUGGUUAGu------GGaAGugCaCGCGCCG- -5'
13239 5' -53.5 NC_003401.1 + 11667 0.67 0.9399
Target:  5'- gGGCCGAggcguuuaAgUUUCGCGUGUGCaGCg -3'
miRNA:   3'- aCUGGUUag------UgGAAGUGCACGCGcCG- -5'
13239 5' -53.5 NC_003401.1 + 103683 0.67 0.9399
Target:  5'- cGACCAcggaAUCGCCguaagauCGgagGcCGCGGCg -3'
miRNA:   3'- aCUGGU----UAGUGGaagu---GCa--C-GCGCCG- -5'
13239 5' -53.5 NC_003401.1 + 20523 0.68 0.912703
Target:  5'- aUGACCGGuuaaauuacUCGCUUacaaUCGCGgGCgGCGGCc -3'
miRNA:   3'- -ACUGGUU---------AGUGGA----AGUGCaCG-CGCCG- -5'
13239 5' -53.5 NC_003401.1 + 105501 0.68 0.906514
Target:  5'- cGGCC-GUCACCUgggcgcUCACGacgauagacgGCGUGGUu -3'
miRNA:   3'- aCUGGuUAGUGGA------AGUGCa---------CGCGCCG- -5'
13239 5' -53.5 NC_003401.1 + 7023 0.68 0.900079
Target:  5'- cGGCCGAaCagGCCgUUCACGUG-GCGGg -3'
miRNA:   3'- aCUGGUUaG--UGG-AAGUGCACgCGCCg -5'
13239 5' -53.5 NC_003401.1 + 23381 0.73 0.656075
Target:  5'- ---aCGGUCGCCagUCGCGcGCGUGGCa -3'
miRNA:   3'- acugGUUAGUGGa-AGUGCaCGCGCCG- -5'
13239 5' -53.5 NC_003401.1 + 118726 0.7 0.796165
Target:  5'- cGGCCGcgC-CgCUUgGCG-GCGCGGCu -3'
miRNA:   3'- aCUGGUuaGuG-GAAgUGCaCGCGCCG- -5'
13239 5' -53.5 NC_003401.1 + 64502 0.7 0.805322
Target:  5'- cGGCCAGggagaACCgguugcCGCGUGgGCGGUa -3'
miRNA:   3'- aCUGGUUag---UGGaa----GUGCACgCGCCG- -5'
13239 5' -53.5 NC_003401.1 + 14763 0.7 0.814314
Target:  5'- cGACCcucagcGAcCGCCUcgUCGCGUGCGgGuGCg -3'
miRNA:   3'- aCUGG------UUaGUGGA--AGUGCACGCgC-CG- -5'
13239 5' -53.5 NC_003401.1 + 60130 0.7 0.823133
Target:  5'- cGACCAG-CGCUUUUAgagGCGCGGUa -3'
miRNA:   3'- aCUGGUUaGUGGAAGUgcaCGCGCCG- -5'
13239 5' -53.5 NC_003401.1 + 105824 0.7 0.831769
Target:  5'- cGGCCAcgcccaagCGCCUUgGCcaggcGCGCGGCg -3'
miRNA:   3'- aCUGGUua------GUGGAAgUGca---CGCGCCG- -5'
13239 5' -53.5 NC_003401.1 + 21640 0.68 0.893401
Target:  5'- cGGCCGcggCACCUUCGgGUGCGgaaaaaaccCGGa -3'
miRNA:   3'- aCUGGUua-GUGGAAGUgCACGC---------GCCg -5'
13239 5' -53.5 NC_003401.1 + 55989 0.68 0.900079
Target:  5'- aGGCUggUCAUUguugUCGCGUGCaCGcGCu -3'
miRNA:   3'- aCUGGuuAGUGGa---AGUGCACGcGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.