miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13239 5' -53.5 NC_003401.1 + 105824 0.7 0.831769
Target:  5'- cGGCCAcgcccaagCGCCUUgGCcaggcGCGCGGCg -3'
miRNA:   3'- aCUGGUua------GUGGAAgUGca---CGCGCCG- -5'
13239 5' -53.5 NC_003401.1 + 21640 0.68 0.893401
Target:  5'- cGGCCGcggCACCUUCGgGUGCGgaaaaaaccCGGa -3'
miRNA:   3'- aCUGGUua-GUGGAAGUgCACGC---------GCCg -5'
13239 5' -53.5 NC_003401.1 + 55989 0.68 0.900079
Target:  5'- aGGCUggUCAUUguugUCGCGUGCaCGcGCu -3'
miRNA:   3'- aCUGGuuAGUGGa---AGUGCACGcGC-CG- -5'
13239 5' -53.5 NC_003401.1 + 7023 0.68 0.900079
Target:  5'- cGGCCGAaCagGCCgUUCACGUG-GCGGg -3'
miRNA:   3'- aCUGGUUaG--UGG-AAGUGCACgCGCCg -5'
13239 5' -53.5 NC_003401.1 + 105501 0.68 0.906514
Target:  5'- cGGCC-GUCACCUgggcgcUCACGacgauagacgGCGUGGUu -3'
miRNA:   3'- aCUGGuUAGUGGA------AGUGCa---------CGCGCCG- -5'
13239 5' -53.5 NC_003401.1 + 20523 0.68 0.912703
Target:  5'- aUGACCGGuuaaauuacUCGCUUacaaUCGCGgGCgGCGGCc -3'
miRNA:   3'- -ACUGGUU---------AGUGGA----AGUGCaCG-CGCCG- -5'
13239 5' -53.5 NC_003401.1 + 85936 0.68 0.912703
Target:  5'- cGAUCAAUUuCCgUUCACG-GCGCuGGUc -3'
miRNA:   3'- aCUGGUUAGuGG-AAGUGCaCGCG-CCG- -5'
13239 5' -53.5 NC_003401.1 + 101775 0.67 0.929772
Target:  5'- -cGCCAGUuuuuuuugcgCAUCU--GCGUGCGUGGCc -3'
miRNA:   3'- acUGGUUA----------GUGGAagUGCACGCGCCG- -5'
13239 5' -53.5 NC_003401.1 + 125840 0.67 0.934961
Target:  5'- aUGGCCGccuUCACCaacgucgggUUCgACGU-CGCGGCc -3'
miRNA:   3'- -ACUGGUu--AGUGG---------AAG-UGCAcGCGCCG- -5'
13239 5' -53.5 NC_003401.1 + 69496 0.66 0.953235
Target:  5'- gGACCcuucCACCUgccgagACGUGC-CGGCa -3'
miRNA:   3'- aCUGGuua-GUGGAag----UGCACGcGCCG- -5'
13239 5' -53.5 NC_003401.1 + 58366 0.66 0.953235
Target:  5'- -cGCCGAUUuuACC--CACGcGCGUGGCa -3'
miRNA:   3'- acUGGUUAG--UGGaaGUGCaCGCGCCG- -5'
13239 5' -53.5 NC_003401.1 + 6015 0.66 0.953235
Target:  5'- cGGCCAcaAUCGCaCgcCACGUGaCGUuaaGGCg -3'
miRNA:   3'- aCUGGU--UAGUG-GaaGUGCAC-GCG---CCG- -5'
13239 5' -53.5 NC_003401.1 + 53106 0.68 0.905882
Target:  5'- cUGGCCGGU-GCCUUaaaauggUACGUGUGCuGCa -3'
miRNA:   3'- -ACUGGUUAgUGGAA-------GUGCACGCGcCG- -5'
13239 5' -53.5 NC_003401.1 + 122406 0.68 0.900079
Target:  5'- cGGCgCucugcgcCACCUaacggUCaauGCGUGCGCGGCa -3'
miRNA:   3'- aCUG-Guua----GUGGA-----AG---UGCACGCGCCG- -5'
13239 5' -53.5 NC_003401.1 + 10334 0.68 0.879329
Target:  5'- gGACCGGaCGCCgu-GC-UGCGUGGCg -3'
miRNA:   3'- aCUGGUUaGUGGaagUGcACGCGCCG- -5'
13239 5' -53.5 NC_003401.1 + 71702 0.69 0.871945
Target:  5'- aGGCUccccgaGCCUUCAUGUuuGCGGCa -3'
miRNA:   3'- aCUGGuuag--UGGAAGUGCAcgCGCCG- -5'
13239 5' -53.5 NC_003401.1 + 112094 0.69 0.848464
Target:  5'- cGuCCGGUCGCCUgacgcUAgGUGCGUacGGCg -3'
miRNA:   3'- aCuGGUUAGUGGAa----GUgCACGCG--CCG- -5'
13239 5' -53.5 NC_003401.1 + 15206 0.71 0.786853
Target:  5'- aGAUCugGAUCACCgcgUCGcCGUcgcGCGUGGCg -3'
miRNA:   3'- aCUGG--UUAGUGGa--AGU-GCA---CGCGCCG- -5'
13239 5' -53.5 NC_003401.1 + 21778 0.72 0.687317
Target:  5'- cGGCCGucCGCUg-CGCGUGcCGCGGCg -3'
miRNA:   3'- aCUGGUuaGUGGaaGUGCAC-GCGCCG- -5'
13239 5' -53.5 NC_003401.1 + 42748 0.66 0.960922
Target:  5'- aUGuCCGAgguaaUCGCCgcaACGUGgGCGGg -3'
miRNA:   3'- -ACuGGUU-----AGUGGaagUGCACgCGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.