Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13239 | 5' | -53.5 | NC_003401.1 | + | 93318 | 0.77 | 0.416497 |
Target: 5'- gGACUuuuUCGCCUUCGCGgaaucaUGCGCGGg -3' miRNA: 3'- aCUGGuu-AGUGGAAGUGC------ACGCGCCg -5' |
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13239 | 5' | -53.5 | NC_003401.1 | + | 69496 | 0.66 | 0.953235 |
Target: 5'- gGACCcuucCACCUgccgagACGUGC-CGGCa -3' miRNA: 3'- aCUGGuua-GUGGAag----UGCACGcGCCG- -5' |
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13239 | 5' | -53.5 | NC_003401.1 | + | 85936 | 0.68 | 0.912703 |
Target: 5'- cGAUCAAUUuCCgUUCACG-GCGCuGGUc -3' miRNA: 3'- aCUGGUUAGuGG-AAGUGCaCGCG-CCG- -5' |
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13239 | 5' | -53.5 | NC_003401.1 | + | 53106 | 0.68 | 0.905882 |
Target: 5'- cUGGCCGGU-GCCUUaaaauggUACGUGUGCuGCa -3' miRNA: 3'- -ACUGGUUAgUGGAA-------GUGCACGCGcCG- -5' |
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13239 | 5' | -53.5 | NC_003401.1 | + | 10334 | 0.68 | 0.879329 |
Target: 5'- gGACCGGaCGCCgu-GC-UGCGUGGCg -3' miRNA: 3'- aCUGGUUaGUGGaagUGcACGCGCCG- -5' |
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13239 | 5' | -53.5 | NC_003401.1 | + | 71702 | 0.69 | 0.871945 |
Target: 5'- aGGCUccccgaGCCUUCAUGUuuGCGGCa -3' miRNA: 3'- aCUGGuuag--UGGAAGUGCAcgCGCCG- -5' |
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13239 | 5' | -53.5 | NC_003401.1 | + | 42748 | 0.66 | 0.960922 |
Target: 5'- aUGuCCGAgguaaUCGCCgcaACGUGgGCGGg -3' miRNA: 3'- -ACuGGUU-----AGUGGaagUGCACgCGCCg -5' |
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13239 | 5' | -53.5 | NC_003401.1 | + | 6015 | 0.66 | 0.953235 |
Target: 5'- cGGCCAcaAUCGCaCgcCACGUGaCGUuaaGGCg -3' miRNA: 3'- aCUGGU--UAGUG-GaaGUGCAC-GCG---CCG- -5' |
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13239 | 5' | -53.5 | NC_003401.1 | + | 125840 | 0.67 | 0.934961 |
Target: 5'- aUGGCCGccuUCACCaacgucgggUUCgACGU-CGCGGCc -3' miRNA: 3'- -ACUGGUu--AGUGG---------AAG-UGCAcGCGCCG- -5' |
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13239 | 5' | -53.5 | NC_003401.1 | + | 122406 | 0.68 | 0.900079 |
Target: 5'- cGGCgCucugcgcCACCUaacggUCaauGCGUGCGCGGCa -3' miRNA: 3'- aCUG-Guua----GUGGA-----AG---UGCACGCGCCG- -5' |
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13239 | 5' | -53.5 | NC_003401.1 | + | 21778 | 0.72 | 0.687317 |
Target: 5'- cGGCCGucCGCUg-CGCGUGcCGCGGCg -3' miRNA: 3'- aCUGGUuaGUGGaaGUGCAC-GCGCCG- -5' |
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13239 | 5' | -53.5 | NC_003401.1 | + | 111187 | 0.66 | 0.960922 |
Target: 5'- -uGuuGGUCGuCCUUUucUGUGCGCGGCc -3' miRNA: 3'- acUggUUAGU-GGAAGu-GCACGCGCCG- -5' |
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13239 | 5' | -53.5 | NC_003401.1 | + | 15206 | 0.71 | 0.786853 |
Target: 5'- aGAUCugGAUCACCgcgUCGcCGUcgcGCGUGGCg -3' miRNA: 3'- aCUGG--UUAGUGGa--AGU-GCA---CGCGCCG- -5' |
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13239 | 5' | -53.5 | NC_003401.1 | + | 101775 | 0.67 | 0.929772 |
Target: 5'- -cGCCAGUuuuuuuugcgCAUCU--GCGUGCGUGGCc -3' miRNA: 3'- acUGGUUA----------GUGGAagUGCACGCGCCG- -5' |
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13239 | 5' | -53.5 | NC_003401.1 | + | 109490 | 0.66 | 0.960922 |
Target: 5'- aGACgAAgcuGCCUgUCAUGgGCGCGGUu -3' miRNA: 3'- aCUGgUUag-UGGA-AGUGCaCGCGCCG- -5' |
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13239 | 5' | -53.5 | NC_003401.1 | + | 112094 | 0.69 | 0.848464 |
Target: 5'- cGuCCGGUCGCCUgacgcUAgGUGCGUacGGCg -3' miRNA: 3'- aCuGGUUAGUGGAa----GUgCACGCG--CCG- -5' |
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13239 | 5' | -53.5 | NC_003401.1 | + | 58366 | 0.66 | 0.953235 |
Target: 5'- -cGCCGAUUuuACC--CACGcGCGUGGCa -3' miRNA: 3'- acUGGUUAG--UGGaaGUGCaCGCGCCG- -5' |
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13239 | 5' | -53.5 | NC_003401.1 | + | 8857 | 0.67 | 0.938932 |
Target: 5'- -aACCugggguaCUUCGCGggGCGCGGCg -3' miRNA: 3'- acUGGuuagug-GAAGUGCa-CGCGCCG- -5' |
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13239 | 5' | -53.5 | NC_003401.1 | + | 16326 | 0.67 | 0.934961 |
Target: 5'- gUGACC----GCCcgUCACGgcGCGCGGUu -3' miRNA: 3'- -ACUGGuuagUGGa-AGUGCa-CGCGCCG- -5' |
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13239 | 5' | -53.5 | NC_003401.1 | + | 57708 | 0.68 | 0.912703 |
Target: 5'- -aACCGGUUACUugccaccauuUUUACGUGggcCGCGGCg -3' miRNA: 3'- acUGGUUAGUGG----------AAGUGCAC---GCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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