miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13240 5' -49.5 NC_003401.1 + 122584 0.66 0.997657
Target:  5'- -gUUUCGGCAgCGgcCGcGCGCugCGCg -3'
miRNA:   3'- caAGAGCUGU-GCauGCuUGUGugGUG- -5'
13240 5' -49.5 NC_003401.1 + 6915 0.66 0.99721
Target:  5'- uUUCUCGAguguccccaggaCGCGUGCGAguuGCugAaCUACg -3'
miRNA:   3'- cAAGAGCU------------GUGCAUGCU---UGugU-GGUG- -5'
13240 5' -49.5 NC_003401.1 + 117885 0.66 0.99721
Target:  5'- --gUUCGGCG---GCGGugGCACCGCg -3'
miRNA:   3'- caaGAGCUGUgcaUGCUugUGUGGUG- -5'
13240 5' -49.5 NC_003401.1 + 80594 0.66 0.996694
Target:  5'- gGUUCauuuCACucACGAGCACGCCACc -3'
miRNA:   3'- -CAAGagcuGUGcaUGCUUGUGUGGUG- -5'
13240 5' -49.5 NC_003401.1 + 19784 0.66 0.995427
Target:  5'- aUUCUCGgggucGCGCGccucGCGAACACACa-- -3'
miRNA:   3'- cAAGAGC-----UGUGCa---UGCUUGUGUGgug -5'
13240 5' -49.5 NC_003401.1 + 40450 0.66 0.995427
Target:  5'- -aUCgUCGACgcugggcugcGCGUugGGACGguCCACu -3'
miRNA:   3'- caAG-AGCUG----------UGCAugCUUGUguGGUG- -5'
13240 5' -49.5 NC_003401.1 + 42226 0.67 0.993507
Target:  5'- -gUCUCGGCaACGUcacgagaccuaucuGCGAuagcaaACGCCGCg -3'
miRNA:   3'- caAGAGCUG-UGCA--------------UGCUug----UGUGGUG- -5'
13240 5' -49.5 NC_003401.1 + 18955 0.67 0.992809
Target:  5'- --gCUCGACACG-GCGggUACuauguCCAg -3'
miRNA:   3'- caaGAGCUGUGCaUGCuuGUGu----GGUg -5'
13240 5' -49.5 NC_003401.1 + 11561 0.67 0.99171
Target:  5'- ---aUCGGCACGgcgguugGCGAaaACGuCACCACc -3'
miRNA:   3'- caagAGCUGUGCa------UGCU--UGU-GUGGUG- -5'
13240 5' -49.5 NC_003401.1 + 47420 0.67 0.99171
Target:  5'- cGUUCUgGAgGacCGUACGAACAUACguCc -3'
miRNA:   3'- -CAAGAgCUgU--GCAUGCUUGUGUGguG- -5'
13240 5' -49.5 NC_003401.1 + 46359 0.67 0.99171
Target:  5'- -aUCUUGugACGUGCucuuuACGCGgCACa -3'
miRNA:   3'- caAGAGCugUGCAUGcu---UGUGUgGUG- -5'
13240 5' -49.5 NC_003401.1 + 99383 0.67 0.990989
Target:  5'- cUUCUCGAggaCGCGaaucguggauuugaaUACGAACAUGCuCACg -3'
miRNA:   3'- cAAGAGCU---GUGC---------------AUGCUUGUGUG-GUG- -5'
13240 5' -49.5 NC_003401.1 + 67631 0.67 0.990482
Target:  5'- uUUUUUGGUugGUACGAccuaaACACGCCAa -3'
miRNA:   3'- cAAGAGCUGugCAUGCU-----UGUGUGGUg -5'
13240 5' -49.5 NC_003401.1 + 70885 0.68 0.989115
Target:  5'- --aCUCgGACACGUcagAUGGACGCGCaaaACg -3'
miRNA:   3'- caaGAG-CUGUGCA---UGCUUGUGUGg--UG- -5'
13240 5' -49.5 NC_003401.1 + 19089 0.68 0.988225
Target:  5'- -gUCUUGugGaaaGUguaggaacaccccggGCGGGCGCACCACc -3'
miRNA:   3'- caAGAGCugUg--CA---------------UGCUUGUGUGGUG- -5'
13240 5' -49.5 NC_003401.1 + 125010 0.68 0.984088
Target:  5'- -cUCgggCGGCACGUACGccCACuGCCAg -3'
miRNA:   3'- caAGa--GCUGUGCAUGCuuGUG-UGGUg -5'
13240 5' -49.5 NC_003401.1 + 88426 0.68 0.984088
Target:  5'- --cCUCGuuGCGUACGuccaggAGCAUGCCGCc -3'
miRNA:   3'- caaGAGCugUGCAUGC------UUGUGUGGUG- -5'
13240 5' -49.5 NC_003401.1 + 11382 0.68 0.984088
Target:  5'- -gUC-CGGCcuguaucuaACGUACGAgcaagACGCGCCGCu -3'
miRNA:   3'- caAGaGCUG---------UGCAUGCU-----UGUGUGGUG- -5'
13240 5' -49.5 NC_003401.1 + 30853 0.68 0.982071
Target:  5'- -gUC-CGAUACGuUGCGGACAU-CCGCg -3'
miRNA:   3'- caAGaGCUGUGC-AUGCUUGUGuGGUG- -5'
13240 5' -49.5 NC_003401.1 + 97460 0.69 0.979867
Target:  5'- -aUCUCGACAacCGUGCcauAUugGCCAUg -3'
miRNA:   3'- caAGAGCUGU--GCAUGcu-UGugUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.