miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13240 5' -49.5 NC_003401.1 + 105007 1.1 0.00996
Target:  5'- cGUUCUCGACACGUACGAACACACCACc -3'
miRNA:   3'- -CAAGAGCUGUGCAUGCUUGUGUGGUG- -5'
13240 5' -49.5 NC_003401.1 + 72112 0.72 0.918822
Target:  5'- --gUUCGACGCagugcccGUAUGGACGCugCACg -3'
miRNA:   3'- caaGAGCUGUG-------CAUGCUUGUGugGUG- -5'
13240 5' -49.5 NC_003401.1 + 100665 0.71 0.925221
Target:  5'- --cCUCGcACGCGUGCcgaGAAC-CACCACc -3'
miRNA:   3'- caaGAGC-UGUGCAUG---CUUGuGUGGUG- -5'
13240 5' -49.5 NC_003401.1 + 87225 0.71 0.945799
Target:  5'- uUUCUgGGCAUGUGaacCGGuuugacACACGCCACg -3'
miRNA:   3'- cAAGAgCUGUGCAU---GCU------UGUGUGGUG- -5'
13240 5' -49.5 NC_003401.1 + 18491 0.7 0.949853
Target:  5'- -gUCUCGcgGCGCGUcgucgGCGGAgcuuaauCGCACCACg -3'
miRNA:   3'- caAGAGC--UGUGCA-----UGCUU-------GUGUGGUG- -5'
13240 5' -49.5 NC_003401.1 + 124872 0.7 0.954528
Target:  5'- ----aCGACugGcACGAACGCGCUAUa -3'
miRNA:   3'- caagaGCUGugCaUGCUUGUGUGGUG- -5'
13240 5' -49.5 NC_003401.1 + 80376 0.7 0.958513
Target:  5'- aUUCUCGAaguccCAUGgcggACGGAC-CACCGCu -3'
miRNA:   3'- cAAGAGCU-----GUGCa---UGCUUGuGUGGUG- -5'
13240 5' -49.5 NC_003401.1 + 14859 0.7 0.958513
Target:  5'- cGUUCggGugGuacuCGUGCGcGCGCGCCACg -3'
miRNA:   3'- -CAAGagCugU----GCAUGCuUGUGUGGUG- -5'
13240 5' -49.5 NC_003401.1 + 91616 0.7 0.958513
Target:  5'- cGUcCUCGGCAa-UugGGACGCACUGCu -3'
miRNA:   3'- -CAaGAGCUGUgcAugCUUGUGUGGUG- -5'
13240 5' -49.5 NC_003401.1 + 64133 0.7 0.965751
Target:  5'- --cUUCGACAgGUGCcacCACACCACc -3'
miRNA:   3'- caaGAGCUGUgCAUGcuuGUGUGGUG- -5'
13240 5' -49.5 NC_003401.1 + 85721 0.69 0.977469
Target:  5'- ----gCGcACACGcGCGGACACACCGg -3'
miRNA:   3'- caagaGC-UGUGCaUGCUUGUGUGGUg -5'
13240 5' -49.5 NC_003401.1 + 97460 0.69 0.979867
Target:  5'- -aUCUCGACAacCGUGCcauAUugGCCAUg -3'
miRNA:   3'- caAGAGCUGU--GCAUGcu-UGugUGGUG- -5'
13240 5' -49.5 NC_003401.1 + 30853 0.68 0.982071
Target:  5'- -gUC-CGAUACGuUGCGGACAU-CCGCg -3'
miRNA:   3'- caAGaGCUGUGC-AUGCUUGUGuGGUG- -5'
13240 5' -49.5 NC_003401.1 + 125010 0.68 0.984088
Target:  5'- -cUCgggCGGCACGUACGccCACuGCCAg -3'
miRNA:   3'- caAGa--GCUGUGCAUGCuuGUG-UGGUg -5'
13240 5' -49.5 NC_003401.1 + 88426 0.68 0.984088
Target:  5'- --cCUCGuuGCGUACGuccaggAGCAUGCCGCc -3'
miRNA:   3'- caaGAGCugUGCAUGC------UUGUGUGGUG- -5'
13240 5' -49.5 NC_003401.1 + 11382 0.68 0.984088
Target:  5'- -gUC-CGGCcuguaucuaACGUACGAgcaagACGCGCCGCu -3'
miRNA:   3'- caAGaGCUG---------UGCAUGCU-----UGUGUGGUG- -5'
13240 5' -49.5 NC_003401.1 + 19089 0.68 0.988225
Target:  5'- -gUCUUGugGaaaGUguaggaacaccccggGCGGGCGCACCACc -3'
miRNA:   3'- caAGAGCugUg--CA---------------UGCUUGUGUGGUG- -5'
13240 5' -49.5 NC_003401.1 + 70885 0.68 0.989115
Target:  5'- --aCUCgGACACGUcagAUGGACGCGCaaaACg -3'
miRNA:   3'- caaGAG-CUGUGCA---UGCUUGUGUGg--UG- -5'
13240 5' -49.5 NC_003401.1 + 67631 0.67 0.990482
Target:  5'- uUUUUUGGUugGUACGAccuaaACACGCCAa -3'
miRNA:   3'- cAAGAGCUGugCAUGCU-----UGUGUGGUg -5'
13240 5' -49.5 NC_003401.1 + 99383 0.67 0.990989
Target:  5'- cUUCUCGAggaCGCGaaucguggauuugaaUACGAACAUGCuCACg -3'
miRNA:   3'- cAAGAGCU---GUGC---------------AUGCUUGUGUG-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.