miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13241 3' -53.5 NC_003401.1 + 28168 0.66 0.948265
Target:  5'- cUUUCCgacgagCCCGUgu---UUCCAGGCGa -3'
miRNA:   3'- -AAAGGa-----GGGCGauuacAAGGUCCGCg -5'
13241 3' -53.5 NC_003401.1 + 104644 0.66 0.948265
Target:  5'- --gCUUCCCGCUAucccaaaacAUaaccgaaaacGUUCCGGcGCGCc -3'
miRNA:   3'- aaaGGAGGGCGAU---------UA----------CAAGGUC-CGCG- -5'
13241 3' -53.5 NC_003401.1 + 132292 0.66 0.938901
Target:  5'- --cCCgggCCCGCgcg----CCGGGCGCc -3'
miRNA:   3'- aaaGGa--GGGCGauuacaaGGUCCGCG- -5'
13241 3' -53.5 NC_003401.1 + 49723 0.66 0.933835
Target:  5'- --aUCUCgUGCg---GggCCAGGCGCg -3'
miRNA:   3'- aaaGGAGgGCGauuaCaaGGUCCGCG- -5'
13241 3' -53.5 NC_003401.1 + 119289 0.67 0.922932
Target:  5'- --aCCUgCUGCagGccGUcUCCAGGCGCg -3'
miRNA:   3'- aaaGGAgGGCGa-UuaCA-AGGUCCGCG- -5'
13241 3' -53.5 NC_003401.1 + 15082 0.67 0.917094
Target:  5'- -gUCCUCCCaGCUGcaGUcaaacUCCAGG-GCc -3'
miRNA:   3'- aaAGGAGGG-CGAUuaCA-----AGGUCCgCG- -5'
13241 3' -53.5 NC_003401.1 + 89826 0.67 0.917094
Target:  5'- -cUCCUCCCGCUccggcggagcugAcgGUgc--GGCGCg -3'
miRNA:   3'- aaAGGAGGGCGA------------UuaCAagguCCGCG- -5'
13241 3' -53.5 NC_003401.1 + 69129 0.67 0.910998
Target:  5'- cUUCCcggacacgucaUCCCGCUAGUacUUCCagucacgacaGGGCGCc -3'
miRNA:   3'- aAAGG-----------AGGGCGAUUAc-AAGG----------UCCGCG- -5'
13241 3' -53.5 NC_003401.1 + 52748 0.67 0.910374
Target:  5'- --aCC-CCCGCgguucagggGAUGUUUcucccggCAGGCGCg -3'
miRNA:   3'- aaaGGaGGGCGa--------UUACAAG-------GUCCGCG- -5'
13241 3' -53.5 NC_003401.1 + 6547 0.69 0.836645
Target:  5'- -gUCUcguUCCCGC-GGUGUUCCagacccagcAGGUGCa -3'
miRNA:   3'- aaAGG---AGGGCGaUUACAAGG---------UCCGCG- -5'
13241 3' -53.5 NC_003401.1 + 23767 0.69 0.819144
Target:  5'- gUUUUUggCCUGCUGccagGUGgcagccgUCCAGGCGCg -3'
miRNA:   3'- -AAAGGa-GGGCGAU----UACa------AGGUCCGCG- -5'
13241 3' -53.5 NC_003401.1 + 21551 0.72 0.659331
Target:  5'- -gUCCUCCCuCUGcacgccGUGUuuaauaauuaaaUCCAGGUGCg -3'
miRNA:   3'- aaAGGAGGGcGAU------UACA------------AGGUCCGCG- -5'
13241 3' -53.5 NC_003401.1 + 13620 0.73 0.638088
Target:  5'- -gUCCUCCCGgaGucccgCCAGGCGUu -3'
miRNA:   3'- aaAGGAGGGCgaUuacaaGGUCCGCG- -5'
13241 3' -53.5 NC_003401.1 + 105279 1.09 0.003414
Target:  5'- gUUUCCUCCCGCUAAUGUUCCAGGCGCu -3'
miRNA:   3'- -AAAGGAGGGCGAUUACAAGGUCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.