miRNA display CGI


Results 1 - 20 of 57 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13242 3' -61.5 NC_003401.1 + 15786 0.66 0.667334
Target:  5'- gCCCGAGgGaCaggggGGCUaucaGGGCGCGaCGGu -3'
miRNA:   3'- -GGGUUCgC-Ggaa--CCGG----UCCGCGC-GCC- -5'
13242 3' -61.5 NC_003401.1 + 72475 0.66 0.657473
Target:  5'- gCCCGcGCGUCacGGCCuuGGC-CGUGGc -3'
miRNA:   3'- -GGGUuCGCGGaaCCGGu-CCGcGCGCC- -5'
13242 3' -61.5 NC_003401.1 + 38369 0.66 0.657473
Target:  5'- aCCGAGUuUCUggGGCCAGGCGaaacgccuCGCGu -3'
miRNA:   3'- gGGUUCGcGGAa-CCGGUCCGC--------GCGCc -5'
13242 3' -61.5 NC_003401.1 + 118348 0.66 0.657473
Target:  5'- gCCCGcGGUGCCgccGCCGGGguCGCccGCGGg -3'
miRNA:   3'- -GGGU-UCGCGGaacCGGUCC--GCG--CGCC- -5'
13242 3' -61.5 NC_003401.1 + 30343 0.66 0.647592
Target:  5'- aCCCAGGaGCga-GGCCAGGUugagGCGCcGGu -3'
miRNA:   3'- -GGGUUCgCGgaaCCGGUCCG----CGCG-CC- -5'
13242 3' -61.5 NC_003401.1 + 9361 0.66 0.647592
Target:  5'- cCCCuAGCGCCggcgcccuacUGGCCGGGaagaaGCGa -3'
miRNA:   3'- -GGGuUCGCGGa---------ACCGGUCCgcg--CGCc -5'
13242 3' -61.5 NC_003401.1 + 21792 0.66 0.647592
Target:  5'- aCCCGaaGGUGCCgcGGCCGuccgcuGCGCGUGc -3'
miRNA:   3'- -GGGU--UCGCGGaaCCGGUc-----CGCGCGCc -5'
13242 3' -61.5 NC_003401.1 + 117898 0.66 0.647592
Target:  5'- aCCGGGCGCgggGGUUcGGCG-GCGGu -3'
miRNA:   3'- gGGUUCGCGgaaCCGGuCCGCgCGCC- -5'
13242 3' -61.5 NC_003401.1 + 23496 0.66 0.6377
Target:  5'- aCCCuucGGUGaCCUcgggGaGCCGGGUGCaggGCGGg -3'
miRNA:   3'- -GGGu--UCGC-GGAa---C-CGGUCCGCG---CGCC- -5'
13242 3' -61.5 NC_003401.1 + 21605 0.66 0.6377
Target:  5'- aCCAaaagGGUGUUUUGGagGGGCGuCGUGGa -3'
miRNA:   3'- gGGU----UCGCGGAACCggUCCGC-GCGCC- -5'
13242 3' -61.5 NC_003401.1 + 14168 0.66 0.617911
Target:  5'- gCCGcGCGgCUcUGGCgggcggcaaguaCAGGCGUGUGGg -3'
miRNA:   3'- gGGUuCGCgGA-ACCG------------GUCCGCGCGCC- -5'
13242 3' -61.5 NC_003401.1 + 30511 0.66 0.617911
Target:  5'- cCCCAccGGCGCCUcaaccUGGCCucGCuccuGgGUGGg -3'
miRNA:   3'- -GGGU--UCGCGGA-----ACCGGucCG----CgCGCC- -5'
13242 3' -61.5 NC_003401.1 + 23994 0.67 0.611979
Target:  5'- aCCCAAcGCGCCcaUUGGCUGccgccagcguccaauGGCcGCGCcGGu -3'
miRNA:   3'- -GGGUU-CGCGG--AACCGGU---------------CCG-CGCG-CC- -5'
13242 3' -61.5 NC_003401.1 + 63945 0.67 0.608028
Target:  5'- aCCAAaCGCggucagUGGCgCGGGCGCGCu- -3'
miRNA:   3'- gGGUUcGCGga----ACCG-GUCCGCGCGcc -5'
13242 3' -61.5 NC_003401.1 + 112097 0.67 0.608028
Target:  5'- gCCCGuccGGuCGCCUgacGCUAGGUGCGUa- -3'
miRNA:   3'- -GGGU---UC-GCGGAac-CGGUCCGCGCGcc -5'
13242 3' -61.5 NC_003401.1 + 132631 0.67 0.588319
Target:  5'- aCCgGGGCGCUcccgggagucGGCCGGGCcCgGCGGa -3'
miRNA:   3'- -GGgUUCGCGGaa--------CCGGUCCGcG-CGCC- -5'
13242 3' -61.5 NC_003401.1 + 79033 0.67 0.588319
Target:  5'- --gAAGUGCCacaugaaaccgUGGCCGGGUGCGUa- -3'
miRNA:   3'- gggUUCGCGGa----------ACCGGUCCGCGCGcc -5'
13242 3' -61.5 NC_003401.1 + 132395 0.67 0.588319
Target:  5'- gCCGGGcCGCUUUcgguucgcggGGCCGGGgGUcccGCGGg -3'
miRNA:   3'- gGGUUC-GCGGAA----------CCGGUCCgCG---CGCC- -5'
13242 3' -61.5 NC_003401.1 + 32321 0.67 0.585372
Target:  5'- gCCCGccuaaaagggcgguGGUGCCg-GGCgGuGGCGCGCGu -3'
miRNA:   3'- -GGGU--------------UCGCGGaaCCGgU-CCGCGCGCc -5'
13242 3' -61.5 NC_003401.1 + 133711 0.67 0.578506
Target:  5'- gCCGGGUGCCcggcGGuCCGGGCG-GgGGa -3'
miRNA:   3'- gGGUUCGCGGaa--CC-GGUCCGCgCgCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.