miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13242 3' -61.5 NC_003401.1 + 63945 0.67 0.608028
Target:  5'- aCCAAaCGCggucagUGGCgCGGGCGCGCu- -3'
miRNA:   3'- gGGUUcGCGga----ACCG-GUCCGCGCGcc -5'
13242 3' -61.5 NC_003401.1 + 132631 0.67 0.588319
Target:  5'- aCCgGGGCGCUcccgggagucGGCCGGGCcCgGCGGa -3'
miRNA:   3'- -GGgUUCGCGGaa--------CCGGUCCGcG-CGCC- -5'
13242 3' -61.5 NC_003401.1 + 118101 0.67 0.578506
Target:  5'- gCCGcGCGCCaccaugGGCCccagauuuGGGC-CGCGGg -3'
miRNA:   3'- gGGUuCGCGGaa----CCGG--------UCCGcGCGCC- -5'
13242 3' -61.5 NC_003401.1 + 133711 0.67 0.578506
Target:  5'- gCCGGGUGCCcggcGGuCCGGGCG-GgGGa -3'
miRNA:   3'- gGGUUCGCGGaa--CC-GGUCCGCgCgCC- -5'
13242 3' -61.5 NC_003401.1 + 108638 0.68 0.520578
Target:  5'- uCCCAGGUGg--UGGCCAGGaGCGUacuGGa -3'
miRNA:   3'- -GGGUUCGCggaACCGGUCCgCGCG---CC- -5'
13242 3' -61.5 NC_003401.1 + 94143 0.68 0.501756
Target:  5'- gCCCAauuaAGCaGUUggagcgGGCC-GGUGCGCGGg -3'
miRNA:   3'- -GGGU----UCG-CGGaa----CCGGuCCGCGCGCC- -5'
13242 3' -61.5 NC_003401.1 + 132679 0.68 0.520578
Target:  5'- cCCCGGGC-CCggggGGCguCGGG-GCGCGGc -3'
miRNA:   3'- -GGGUUCGcGGaa--CCG--GUCCgCGCGCC- -5'
13242 3' -61.5 NC_003401.1 + 128358 0.68 0.511131
Target:  5'- gCCAAGUGUCagggcGGCCaAGGUGCcCGGg -3'
miRNA:   3'- gGGUUCGCGGaa---CCGG-UCCGCGcGCC- -5'
13242 3' -61.5 NC_003401.1 + 117937 0.68 0.511131
Target:  5'- gCCCAaaucuGGgGCCcaUGGU--GGCGCGCGGc -3'
miRNA:   3'- -GGGU-----UCgCGGa-ACCGguCCGCGCGCC- -5'
13242 3' -61.5 NC_003401.1 + 23691 0.68 0.53967
Target:  5'- gCC-AGCGCCaccaccGGCCuccucugcGGCGCGCGu -3'
miRNA:   3'- gGGuUCGCGGaa----CCGGu-------CCGCGCGCc -5'
13242 3' -61.5 NC_003401.1 + 80330 0.68 0.549305
Target:  5'- gUCUAGGCuggGCCa-GGCCaAGGCGCGCc- -3'
miRNA:   3'- -GGGUUCG---CGGaaCCGG-UCCGCGCGcc -5'
13242 3' -61.5 NC_003401.1 + 121193 0.69 0.483238
Target:  5'- aCCCAGGaucgaccccCCUcGGCCGGGCcCGUGGu -3'
miRNA:   3'- -GGGUUCgc-------GGAaCCGGUCCGcGCGCC- -5'
13242 3' -61.5 NC_003401.1 + 119273 0.69 0.474103
Target:  5'- cUCCAGGCGCgacgUGGCCAaGGU-CGUGGc -3'
miRNA:   3'- -GGGUUCGCGga--ACCGGU-CCGcGCGCC- -5'
13242 3' -61.5 NC_003401.1 + 45052 0.69 0.474103
Target:  5'- gCCAGGcCGCCUUuaacagGGCCAGcccauaguguGCGCGCu- -3'
miRNA:   3'- gGGUUC-GCGGAA------CCGGUC----------CGCGCGcc -5'
13242 3' -61.5 NC_003401.1 + 104836 0.69 0.456099
Target:  5'- aCCGAGU-CCaucGCCGGGCGCGcCGGa -3'
miRNA:   3'- gGGUUCGcGGaacCGGUCCGCGC-GCC- -5'
13242 3' -61.5 NC_003401.1 + 14068 0.69 0.474103
Target:  5'- aCCCucuAGCGCCc---CCGGGCGUccGCGGu -3'
miRNA:   3'- -GGGu--UCGCGGaaccGGUCCGCG--CGCC- -5'
13242 3' -61.5 NC_003401.1 + 116525 0.7 0.438469
Target:  5'- gCCAGGaGCCUUGG-CAGGCagucgcaccucuGUGCGGc -3'
miRNA:   3'- gGGUUCgCGGAACCgGUCCG------------CGCGCC- -5'
13242 3' -61.5 NC_003401.1 + 13669 0.7 0.412774
Target:  5'- -aCAGGuCGCg--GGCCAGGCGguCGCGGu -3'
miRNA:   3'- ggGUUC-GCGgaaCCGGUCCGC--GCGCC- -5'
13242 3' -61.5 NC_003401.1 + 107628 0.7 0.412774
Target:  5'- uCCCGGGUccGCCgccaCCGGGCGCGgGGc -3'
miRNA:   3'- -GGGUUCG--CGGaaccGGUCCGCGCgCC- -5'
13242 3' -61.5 NC_003401.1 + 18791 0.7 0.438469
Target:  5'- aCCCAcuGGacauaguaccCGCCgUGGUCGaGCGCGCGGa -3'
miRNA:   3'- -GGGU--UC----------GCGGaACCGGUcCGCGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.