miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13242 3' -61.5 NC_003401.1 + 105831 1.1 0.000692
Target:  5'- gCCCAAGCGCCUUGGCCAGGCGCGCGGc -3'
miRNA:   3'- -GGGUUCGCGGAACCGGUCCGCGCGCC- -5'
13242 3' -61.5 NC_003401.1 + 132677 0.81 0.081907
Target:  5'- cCCgGGGCGCCUcGGCgGGGCccgGCGCGGg -3'
miRNA:   3'- -GGgUUCGCGGAaCCGgUCCG---CGCGCC- -5'
13242 3' -61.5 NC_003401.1 + 49704 0.8 0.09242
Target:  5'- aCCCucGUGCCccugccuuaucucgUgcggGGCCAGGCGCGCGGc -3'
miRNA:   3'- -GGGuuCGCGG--------------Aa---CCGGUCCGCGCGCC- -5'
13242 3' -61.5 NC_003401.1 + 132444 0.79 0.117097
Target:  5'- gCCCGGcGCGCg--GGCCcgggGGGCGCGCGGg -3'
miRNA:   3'- -GGGUU-CGCGgaaCCGG----UCCGCGCGCC- -5'
13242 3' -61.5 NC_003401.1 + 132223 0.76 0.183001
Target:  5'- gCCCGgccGGCGCCgccGCCGGGC-CGCGGc -3'
miRNA:   3'- -GGGU---UCGCGGaacCGGUCCGcGCGCC- -5'
13242 3' -61.5 NC_003401.1 + 132379 0.75 0.196762
Target:  5'- gCCCGgcggcGGCGCC--GGCCGGGCGCcucCGGg -3'
miRNA:   3'- -GGGU-----UCGCGGaaCCGGUCCGCGc--GCC- -5'
13242 3' -61.5 NC_003401.1 + 132533 0.75 0.21651
Target:  5'- cCCCGGGC-CCggGGCCccacaagccgcGGCGCGCGGc -3'
miRNA:   3'- -GGGUUCGcGGaaCCGGu----------CCGCGCGCC- -5'
13242 3' -61.5 NC_003401.1 + 105991 0.74 0.232414
Target:  5'- gCCGcGCGCCU-GGCCaAGGCGCuuGGg -3'
miRNA:   3'- gGGUuCGCGGAaCCGG-UCCGCGcgCC- -5'
13242 3' -61.5 NC_003401.1 + 87979 0.74 0.255137
Target:  5'- -aCGAGUGUCUgUGG-CGGGCGUGCGGg -3'
miRNA:   3'- ggGUUCGCGGA-ACCgGUCCGCGCGCC- -5'
13242 3' -61.5 NC_003401.1 + 15670 0.73 0.299239
Target:  5'- gCCAAGCugGCCaagauucaGGCCAGGCGCGUc- -3'
miRNA:   3'- gGGUUCG--CGGaa------CCGGUCCGCGCGcc -5'
13242 3' -61.5 NC_003401.1 + 15033 0.72 0.341555
Target:  5'- gCCAGGCGg---GGCguGGCGCGCGc -3'
miRNA:   3'- gGGUUCGCggaaCCGguCCGCGCGCc -5'
13242 3' -61.5 NC_003401.1 + 80161 0.71 0.349015
Target:  5'- aCCCAAuaggcGCGCCUUGGCCuGGCccaGCc- -3'
miRNA:   3'- -GGGUU-----CGCGGAACCGGuCCGcg-CGcc -5'
13242 3' -61.5 NC_003401.1 + 132824 0.71 0.359652
Target:  5'- gCCgAGGCGCCccgGGCCccggccccccucccGGCGgCGCGGa -3'
miRNA:   3'- -GGgUUCGCGGaa-CCGGu-------------CCGC-GCGCC- -5'
13242 3' -61.5 NC_003401.1 + 132280 0.71 0.36428
Target:  5'- cCCCGcGCGCCccccgGGCCc-GCGCGcCGGg -3'
miRNA:   3'- -GGGUuCGCGGaa---CCGGucCGCGC-GCC- -5'
13242 3' -61.5 NC_003401.1 + 14220 0.71 0.36428
Target:  5'- gCCCGggggcgcuagagGGUGUCggggaccGGCCGGGUGCGCGa -3'
miRNA:   3'- -GGGU------------UCGCGGaa-----CCGGUCCGCGCGCc -5'
13242 3' -61.5 NC_003401.1 + 117857 0.71 0.372084
Target:  5'- aCCCcGGCGCCaaagagcGGCCgauGGGUacGCGCGGc -3'
miRNA:   3'- -GGGuUCGCGGaa-----CCGG---UCCG--CGCGCC- -5'
13242 3' -61.5 NC_003401.1 + 13669 0.7 0.412774
Target:  5'- -aCAGGuCGCg--GGCCAGGCGguCGCGGu -3'
miRNA:   3'- ggGUUC-GCGgaaCCGGUCCGC--GCGCC- -5'
13242 3' -61.5 NC_003401.1 + 107628 0.7 0.412774
Target:  5'- uCCCGGGUccGCCgccaCCGGGCGCGgGGc -3'
miRNA:   3'- -GGGUUCG--CGGaaccGGUCCGCGCgCC- -5'
13242 3' -61.5 NC_003401.1 + 132559 0.7 0.42465
Target:  5'- cCCCcGGCcCCgcgaaccgaaagcGGCCcGGCGCGCGGc -3'
miRNA:   3'- -GGGuUCGcGGaa-----------CCGGuCCGCGCGCC- -5'
13242 3' -61.5 NC_003401.1 + 18791 0.7 0.438469
Target:  5'- aCCCAcuGGacauaguaccCGCCgUGGUCGaGCGCGCGGa -3'
miRNA:   3'- -GGGU--UC----------GCGGaACCGGUcCGCGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.