Results 41 - 57 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13242 | 3' | -61.5 | NC_003401.1 | + | 79033 | 0.67 | 0.588319 |
Target: 5'- --gAAGUGCCacaugaaaccgUGGCCGGGUGCGUa- -3' miRNA: 3'- gggUUCGCGGa----------ACCGGUCCGCGCGcc -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 132395 | 0.67 | 0.588319 |
Target: 5'- gCCGGGcCGCUUUcgguucgcggGGCCGGGgGUcccGCGGg -3' miRNA: 3'- gGGUUC-GCGGAA----------CCGGUCCgCG---CGCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 112097 | 0.67 | 0.608028 |
Target: 5'- gCCCGuccGGuCGCCUgacGCUAGGUGCGUa- -3' miRNA: 3'- -GGGU---UC-GCGGAac-CGGUCCGCGCGcc -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 63945 | 0.67 | 0.608028 |
Target: 5'- aCCAAaCGCggucagUGGCgCGGGCGCGCu- -3' miRNA: 3'- gGGUUcGCGga----ACCG-GUCCGCGCGcc -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 23994 | 0.67 | 0.611979 |
Target: 5'- aCCCAAcGCGCCcaUUGGCUGccgccagcguccaauGGCcGCGCcGGu -3' miRNA: 3'- -GGGUU-CGCGG--AACCGGU---------------CCG-CGCG-CC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 30511 | 0.66 | 0.617911 |
Target: 5'- cCCCAccGGCGCCUcaaccUGGCCucGCuccuGgGUGGg -3' miRNA: 3'- -GGGU--UCGCGGA-----ACCGGucCG----CgCGCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 14168 | 0.66 | 0.617911 |
Target: 5'- gCCGcGCGgCUcUGGCgggcggcaaguaCAGGCGUGUGGg -3' miRNA: 3'- gGGUuCGCgGA-ACCG------------GUCCGCGCGCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 21605 | 0.66 | 0.6377 |
Target: 5'- aCCAaaagGGUGUUUUGGagGGGCGuCGUGGa -3' miRNA: 3'- gGGU----UCGCGGAACCggUCCGC-GCGCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 23496 | 0.66 | 0.6377 |
Target: 5'- aCCCuucGGUGaCCUcgggGaGCCGGGUGCaggGCGGg -3' miRNA: 3'- -GGGu--UCGC-GGAa---C-CGGUCCGCG---CGCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 21792 | 0.66 | 0.647592 |
Target: 5'- aCCCGaaGGUGCCgcGGCCGuccgcuGCGCGUGc -3' miRNA: 3'- -GGGU--UCGCGGaaCCGGUc-----CGCGCGCc -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 117898 | 0.66 | 0.647592 |
Target: 5'- aCCGGGCGCgggGGUUcGGCG-GCGGu -3' miRNA: 3'- gGGUUCGCGgaaCCGGuCCGCgCGCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 9361 | 0.66 | 0.647592 |
Target: 5'- cCCCuAGCGCCggcgcccuacUGGCCGGGaagaaGCGa -3' miRNA: 3'- -GGGuUCGCGGa---------ACCGGUCCgcg--CGCc -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 30343 | 0.66 | 0.647592 |
Target: 5'- aCCCAGGaGCga-GGCCAGGUugagGCGCcGGu -3' miRNA: 3'- -GGGUUCgCGgaaCCGGUCCG----CGCG-CC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 72475 | 0.66 | 0.657473 |
Target: 5'- gCCCGcGCGUCacGGCCuuGGC-CGUGGc -3' miRNA: 3'- -GGGUuCGCGGaaCCGGu-CCGcGCGCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 118348 | 0.66 | 0.657473 |
Target: 5'- gCCCGcGGUGCCgccGCCGGGguCGCccGCGGg -3' miRNA: 3'- -GGGU-UCGCGGaacCGGUCC--GCG--CGCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 38369 | 0.66 | 0.657473 |
Target: 5'- aCCGAGUuUCUggGGCCAGGCGaaacgccuCGCGu -3' miRNA: 3'- gGGUUCGcGGAa-CCGGUCCGC--------GCGCc -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 15786 | 0.66 | 0.667334 |
Target: 5'- gCCCGAGgGaCaggggGGCUaucaGGGCGCGaCGGu -3' miRNA: 3'- -GGGUUCgC-Ggaa--CCGG----UCCGCGC-GCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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