miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13242 3' -61.5 NC_003401.1 + 63945 0.67 0.608028
Target:  5'- aCCAAaCGCggucagUGGCgCGGGCGCGCu- -3'
miRNA:   3'- gGGUUcGCGga----ACCG-GUCCGCGCGcc -5'
13242 3' -61.5 NC_003401.1 + 72475 0.66 0.657473
Target:  5'- gCCCGcGCGUCacGGCCuuGGC-CGUGGc -3'
miRNA:   3'- -GGGUuCGCGGaaCCGGu-CCGcGCGCC- -5'
13242 3' -61.5 NC_003401.1 + 74944 0.67 0.578506
Target:  5'- gCCAAGCGC-----CCAGGCG-GCGGg -3'
miRNA:   3'- gGGUUCGCGgaaccGGUCCGCgCGCC- -5'
13242 3' -61.5 NC_003401.1 + 79033 0.67 0.588319
Target:  5'- --gAAGUGCCacaugaaaccgUGGCCGGGUGCGUa- -3'
miRNA:   3'- gggUUCGCGGa----------ACCGGUCCGCGCGcc -5'
13242 3' -61.5 NC_003401.1 + 80161 0.71 0.349015
Target:  5'- aCCCAAuaggcGCGCCUUGGCCuGGCccaGCc- -3'
miRNA:   3'- -GGGUU-----CGCGGAACCGGuCCGcg-CGcc -5'
13242 3' -61.5 NC_003401.1 + 80330 0.68 0.549305
Target:  5'- gUCUAGGCuggGCCa-GGCCaAGGCGCGCc- -3'
miRNA:   3'- -GGGUUCG---CGGaaCCGG-UCCGCGCGcc -5'
13242 3' -61.5 NC_003401.1 + 87979 0.74 0.255137
Target:  5'- -aCGAGUGUCUgUGG-CGGGCGUGCGGg -3'
miRNA:   3'- ggGUUCGCGGA-ACCgGUCCGCGCGCC- -5'
13242 3' -61.5 NC_003401.1 + 94143 0.68 0.501756
Target:  5'- gCCCAauuaAGCaGUUggagcgGGCC-GGUGCGCGGg -3'
miRNA:   3'- -GGGU----UCG-CGGaa----CCGGuCCGCGCGCC- -5'
13242 3' -61.5 NC_003401.1 + 104836 0.69 0.456099
Target:  5'- aCCGAGU-CCaucGCCGGGCGCGcCGGa -3'
miRNA:   3'- gGGUUCGcGGaacCGGUCCGCGC-GCC- -5'
13242 3' -61.5 NC_003401.1 + 105831 1.1 0.000692
Target:  5'- gCCCAAGCGCCUUGGCCAGGCGCGCGGc -3'
miRNA:   3'- -GGGUUCGCGGAACCGGUCCGCGCGCC- -5'
13242 3' -61.5 NC_003401.1 + 105991 0.74 0.232414
Target:  5'- gCCGcGCGCCU-GGCCaAGGCGCuuGGg -3'
miRNA:   3'- gGGUuCGCGGAaCCGG-UCCGCGcgCC- -5'
13242 3' -61.5 NC_003401.1 + 107628 0.7 0.412774
Target:  5'- uCCCGGGUccGCCgccaCCGGGCGCGgGGc -3'
miRNA:   3'- -GGGUUCG--CGGaaccGGUCCGCGCgCC- -5'
13242 3' -61.5 NC_003401.1 + 108638 0.68 0.520578
Target:  5'- uCCCAGGUGg--UGGCCAGGaGCGUacuGGa -3'
miRNA:   3'- -GGGUUCGCggaACCGGUCCgCGCG---CC- -5'
13242 3' -61.5 NC_003401.1 + 112097 0.67 0.608028
Target:  5'- gCCCGuccGGuCGCCUgacGCUAGGUGCGUa- -3'
miRNA:   3'- -GGGU---UC-GCGGAac-CGGUCCGCGCGcc -5'
13242 3' -61.5 NC_003401.1 + 116525 0.7 0.438469
Target:  5'- gCCAGGaGCCUUGG-CAGGCagucgcaccucuGUGCGGc -3'
miRNA:   3'- gGGUUCgCGGAACCgGUCCG------------CGCGCC- -5'
13242 3' -61.5 NC_003401.1 + 117857 0.71 0.372084
Target:  5'- aCCCcGGCGCCaaagagcGGCCgauGGGUacGCGCGGc -3'
miRNA:   3'- -GGGuUCGCGGaa-----CCGG---UCCG--CGCGCC- -5'
13242 3' -61.5 NC_003401.1 + 117898 0.66 0.647592
Target:  5'- aCCGGGCGCgggGGUUcGGCG-GCGGu -3'
miRNA:   3'- gGGUUCGCGgaaCCGGuCCGCgCGCC- -5'
13242 3' -61.5 NC_003401.1 + 117937 0.68 0.511131
Target:  5'- gCCCAaaucuGGgGCCcaUGGU--GGCGCGCGGc -3'
miRNA:   3'- -GGGU-----UCgCGGa-ACCGguCCGCGCGCC- -5'
13242 3' -61.5 NC_003401.1 + 118101 0.67 0.578506
Target:  5'- gCCGcGCGCCaccaugGGCCccagauuuGGGC-CGCGGg -3'
miRNA:   3'- gGGUuCGCGGaa----CCGG--------UCCGcGCGCC- -5'
13242 3' -61.5 NC_003401.1 + 118348 0.66 0.657473
Target:  5'- gCCCGcGGUGCCgccGCCGGGguCGCccGCGGg -3'
miRNA:   3'- -GGGU-UCGCGGaacCGGUCC--GCG--CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.