miRNA display CGI


Results 41 - 57 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13242 3' -61.5 NC_003401.1 + 119273 0.69 0.474103
Target:  5'- cUCCAGGCGCgacgUGGCCAaGGU-CGUGGc -3'
miRNA:   3'- -GGGUUCGCGga--ACCGGU-CCGcGCGCC- -5'
13242 3' -61.5 NC_003401.1 + 121193 0.69 0.483238
Target:  5'- aCCCAGGaucgaccccCCUcGGCCGGGCcCGUGGu -3'
miRNA:   3'- -GGGUUCgc-------GGAaCCGGUCCGcGCGCC- -5'
13242 3' -61.5 NC_003401.1 + 123358 0.67 0.578506
Target:  5'- -aUAGGCGgUUUGGCCGcGGCGCGgccccUGGa -3'
miRNA:   3'- ggGUUCGCgGAACCGGU-CCGCGC-----GCC- -5'
13242 3' -61.5 NC_003401.1 + 128358 0.68 0.511131
Target:  5'- gCCAAGUGUCagggcGGCCaAGGUGCcCGGg -3'
miRNA:   3'- gGGUUCGCGGaa---CCGG-UCCGCGcGCC- -5'
13242 3' -61.5 NC_003401.1 + 132223 0.76 0.183001
Target:  5'- gCCCGgccGGCGCCgccGCCGGGC-CGCGGc -3'
miRNA:   3'- -GGGU---UCGCGGaacCGGUCCGcGCGCC- -5'
13242 3' -61.5 NC_003401.1 + 132280 0.71 0.36428
Target:  5'- cCCCGcGCGCCccccgGGCCc-GCGCGcCGGg -3'
miRNA:   3'- -GGGUuCGCGGaa---CCGGucCGCGC-GCC- -5'
13242 3' -61.5 NC_003401.1 + 132379 0.75 0.196762
Target:  5'- gCCCGgcggcGGCGCC--GGCCGGGCGCcucCGGg -3'
miRNA:   3'- -GGGU-----UCGCGGaaCCGGUCCGCGc--GCC- -5'
13242 3' -61.5 NC_003401.1 + 132395 0.67 0.588319
Target:  5'- gCCGGGcCGCUUUcgguucgcggGGCCGGGgGUcccGCGGg -3'
miRNA:   3'- gGGUUC-GCGGAA----------CCGGUCCgCG---CGCC- -5'
13242 3' -61.5 NC_003401.1 + 132444 0.79 0.117097
Target:  5'- gCCCGGcGCGCg--GGCCcgggGGGCGCGCGGg -3'
miRNA:   3'- -GGGUU-CGCGgaaCCGG----UCCGCGCGCC- -5'
13242 3' -61.5 NC_003401.1 + 132449 0.67 0.568729
Target:  5'- cCCCGGGUGCCgcuccGCCGGGC-C-CGGc -3'
miRNA:   3'- -GGGUUCGCGGaac--CGGUCCGcGcGCC- -5'
13242 3' -61.5 NC_003401.1 + 132533 0.75 0.21651
Target:  5'- cCCCGGGC-CCggGGCCccacaagccgcGGCGCGCGGc -3'
miRNA:   3'- -GGGUUCGcGGaaCCGGu----------CCGCGCGCC- -5'
13242 3' -61.5 NC_003401.1 + 132559 0.7 0.42465
Target:  5'- cCCCcGGCcCCgcgaaccgaaagcGGCCcGGCGCGCGGc -3'
miRNA:   3'- -GGGuUCGcGGaa-----------CCGGuCCGCGCGCC- -5'
13242 3' -61.5 NC_003401.1 + 132631 0.67 0.588319
Target:  5'- aCCgGGGCGCUcccgggagucGGCCGGGCcCgGCGGa -3'
miRNA:   3'- -GGgUUCGCGGaa--------CCGGUCCGcG-CGCC- -5'
13242 3' -61.5 NC_003401.1 + 132677 0.81 0.081907
Target:  5'- cCCgGGGCGCCUcGGCgGGGCccgGCGCGGg -3'
miRNA:   3'- -GGgUUCGCGGAaCCGgUCCG---CGCGCC- -5'
13242 3' -61.5 NC_003401.1 + 132679 0.68 0.520578
Target:  5'- cCCCGGGC-CCggggGGCguCGGG-GCGCGGc -3'
miRNA:   3'- -GGGUUCGcGGaa--CCG--GUCCgCGCGCC- -5'
13242 3' -61.5 NC_003401.1 + 132824 0.71 0.359652
Target:  5'- gCCgAGGCGCCccgGGCCccggccccccucccGGCGgCGCGGa -3'
miRNA:   3'- -GGgUUCGCGGaa-CCGGu-------------CCGC-GCGCC- -5'
13242 3' -61.5 NC_003401.1 + 133711 0.67 0.578506
Target:  5'- gCCGGGUGCCcggcGGuCCGGGCG-GgGGa -3'
miRNA:   3'- gGGUUCGCGGaa--CC-GGUCCGCgCgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.