Results 21 - 40 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13242 | 3' | -61.5 | NC_003401.1 | + | 117898 | 0.66 | 0.647592 |
Target: 5'- aCCGGGCGCgggGGUUcGGCG-GCGGu -3' miRNA: 3'- gGGUUCGCGgaaCCGGuCCGCgCGCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 117857 | 0.71 | 0.372084 |
Target: 5'- aCCCcGGCGCCaaagagcGGCCgauGGGUacGCGCGGc -3' miRNA: 3'- -GGGuUCGCGGaa-----CCGG---UCCG--CGCGCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 116525 | 0.7 | 0.438469 |
Target: 5'- gCCAGGaGCCUUGG-CAGGCagucgcaccucuGUGCGGc -3' miRNA: 3'- gGGUUCgCGGAACCgGUCCG------------CGCGCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 112097 | 0.67 | 0.608028 |
Target: 5'- gCCCGuccGGuCGCCUgacGCUAGGUGCGUa- -3' miRNA: 3'- -GGGU---UC-GCGGAac-CGGUCCGCGCGcc -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 108638 | 0.68 | 0.520578 |
Target: 5'- uCCCAGGUGg--UGGCCAGGaGCGUacuGGa -3' miRNA: 3'- -GGGUUCGCggaACCGGUCCgCGCG---CC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 107628 | 0.7 | 0.412774 |
Target: 5'- uCCCGGGUccGCCgccaCCGGGCGCGgGGc -3' miRNA: 3'- -GGGUUCG--CGGaaccGGUCCGCGCgCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 105991 | 0.74 | 0.232414 |
Target: 5'- gCCGcGCGCCU-GGCCaAGGCGCuuGGg -3' miRNA: 3'- gGGUuCGCGGAaCCGG-UCCGCGcgCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 105831 | 1.1 | 0.000692 |
Target: 5'- gCCCAAGCGCCUUGGCCAGGCGCGCGGc -3' miRNA: 3'- -GGGUUCGCGGAACCGGUCCGCGCGCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 104836 | 0.69 | 0.456099 |
Target: 5'- aCCGAGU-CCaucGCCGGGCGCGcCGGa -3' miRNA: 3'- gGGUUCGcGGaacCGGUCCGCGC-GCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 94143 | 0.68 | 0.501756 |
Target: 5'- gCCCAauuaAGCaGUUggagcgGGCC-GGUGCGCGGg -3' miRNA: 3'- -GGGU----UCG-CGGaa----CCGGuCCGCGCGCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 87979 | 0.74 | 0.255137 |
Target: 5'- -aCGAGUGUCUgUGG-CGGGCGUGCGGg -3' miRNA: 3'- ggGUUCGCGGA-ACCgGUCCGCGCGCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 80330 | 0.68 | 0.549305 |
Target: 5'- gUCUAGGCuggGCCa-GGCCaAGGCGCGCc- -3' miRNA: 3'- -GGGUUCG---CGGaaCCGG-UCCGCGCGcc -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 80161 | 0.71 | 0.349015 |
Target: 5'- aCCCAAuaggcGCGCCUUGGCCuGGCccaGCc- -3' miRNA: 3'- -GGGUU-----CGCGGAACCGGuCCGcg-CGcc -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 79033 | 0.67 | 0.588319 |
Target: 5'- --gAAGUGCCacaugaaaccgUGGCCGGGUGCGUa- -3' miRNA: 3'- gggUUCGCGGa----------ACCGGUCCGCGCGcc -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 74944 | 0.67 | 0.578506 |
Target: 5'- gCCAAGCGC-----CCAGGCG-GCGGg -3' miRNA: 3'- gGGUUCGCGgaaccGGUCCGCgCGCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 72475 | 0.66 | 0.657473 |
Target: 5'- gCCCGcGCGUCacGGCCuuGGC-CGUGGc -3' miRNA: 3'- -GGGUuCGCGGaaCCGGu-CCGcGCGCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 63945 | 0.67 | 0.608028 |
Target: 5'- aCCAAaCGCggucagUGGCgCGGGCGCGCu- -3' miRNA: 3'- gGGUUcGCGga----ACCG-GUCCGCGCGcc -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 49704 | 0.8 | 0.09242 |
Target: 5'- aCCCucGUGCCccugccuuaucucgUgcggGGCCAGGCGCGCGGc -3' miRNA: 3'- -GGGuuCGCGG--------------Aa---CCGGUCCGCGCGCC- -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 45052 | 0.69 | 0.474103 |
Target: 5'- gCCAGGcCGCCUUuaacagGGCCAGcccauaguguGCGCGCu- -3' miRNA: 3'- gGGUUC-GCGGAA------CCGGUC----------CGCGCGcc -5' |
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13242 | 3' | -61.5 | NC_003401.1 | + | 38369 | 0.66 | 0.657473 |
Target: 5'- aCCGAGUuUCUggGGCCAGGCGaaacgccuCGCGu -3' miRNA: 3'- gGGUUCGcGGAa-CCGGUCCGC--------GCGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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